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Author SHA1 Message Date
2c11435f7f
#000067 phase 2: 3rd "fts" pack kind for skip-rebuild hydrate
Each producer shard now optionally emits a THIRD pack alongside its
metadata and chunks packs: an "fts" pack containing the FTS5 shadow
tables (chunks_fts_data, chunks_fts_idx, chunks_fts_docsize,
chunks_fts_config + the documents_fts_* counterparts) packed as a
fresh SQLite file inside the tar so BLOB columns round-trip natively.

Consumer detects fts_pack_hashes in the metadata pack's manifest,
pulls each fts pack, ATTACHes the embedded sqlite, INSERTs every
shadow-table row into its target's empty shadow tables, and SKIPS
the local FTS rebuild entirely.

Producer side:
  arborist/cold_object.py
    + PACK_KIND_FTS = "fts"
    + FTS_SHADOW_TABLES tuple (8 shadow tables)
    + build_fts_pack(src_db_path, ...)
        creates a temp sqlite, applies SCHEMA_SQL (so destination
        has FTS virtual tables → shadow tables auto-created), copies
        every shadow-table row from src via cursor iteration, packs
        the sqlite file into tar.zst
    + ParsedManifest.fts_pack_hashes
    + parse_manifest reads _fts_pack_hashes records
    + build_metadata_pack accepts fts_pack_hashes parameter and
      writes the new manifest record
  arborist/evict.py:push_pack
    + include_fts: bool = True parameter (CLI --no-fts opts out)
    + Phase B.5 emits the fts pack BEFORE Phase C (metadata pack)
      so its hash can be referenced in the metadata manifest

Consumer side:
  arborist/evict.py
    + _pull_fts_pack_into_targets() — pulls fts pack body, extracts
      embedded sqlite, ATTACHes into each target, INSERT OR IGNORE
      every shadow-table row. INSERT OR IGNORE protects against
      rowid collisions on other targets that don't own these chunks.
    + hydrate_from_metadata_pack_routed iterates fts_pack_hashes in
      full mode, calls _pull_fts_pack_into_targets per pack
    + _pull_pack_inner_routed returns fts_pack_hashes_referenced in
      its result dict (mirrors chunk_pack_hashes_referenced)

CLI / Makefile:
  arborist cold pack --no-fts                     (opt-out)
  make cold-hydrate                                (auto-detects: if
                                                   chunks_fts_data is
                                                   already populated
                                                   on shard 000 after
                                                   unpack, skip the
                                                   rebuild post-pass)
  make cold-hydrate HYDRATE_REBUILD_FTS=1          (force rebuild)
  make cold-hydrate HYDRATE_REBUILD_FTS=0          (skip rebuild)

Schema:
  cold_pending.kind CHECK extended to include 'fts'
  pack_key() accepts kind="fts" → packs/<hash>.fts.tar.zst

Expected wall-time impact on the 3090 genesis bench:
  with fts in packs:  no rebuild step → ~5-10 min total wall
  without fts:        rebuild post-pass needed → ~15-20 min

Trade-off: ~30-50% larger bucket (FTS shadow data per shard) for
~70-90% faster consumer hydrate. Producer flips the trade via
--no-fts. The fts pack is optional in the manifest (empty list →
consumer falls back to rebuild) so old bucket data without fts
packs continues to work unchanged.

34 cold-unpack-routed + migrate + planner tests pass.
2026-05-26 19:13:01 -04:00
9cfb9c8d01
#000067: M-aware cold-pack hydration (route per-row into M target shards)
Open ticket. Today's hydrate_from_metadata_pack takes one conn and
writes every incoming row into one shard — fine when the corpus
was a single shard, broken now that #000065 put the producer in
M=4 hash-routed topology. A fresh peer pulling packs must land each
doc on `shard_for_document(document_root, M)` — same routing
function as the producer — or the consumer's M=4 ATTACH-and-route
assumption is just decoration over a single-shard reality.

Plan:
  1. Add corpus_shard_count to pack manifest (read from source meta
     during dump_shard_metadata) — pack carries the M it was built
     against.
  2. restore_shard_metadata_routed(targets, M, table_dir) in
     cold_pack_metadata.py — mirrors _route_per_doc_table from
     migrate.py (per-document tables route by document_root /
     src_root / core_root; consolidated tables all go to target 0).
  3. hydrate_from_metadata_pack gains a targets / shards_dir param.
  4. arborist cold unpack --shards-dir DIR initialises M target
     shards from the manifest's corpus_shard_count and routes.
  5. Regression test: pack 2 shards → hydrate into fresh 4 shards
     → assert every doc on its hash-routed target.

Refactor question (raised, not decided): the routing rules
(ROUTED_BY_DOCUMENT_ROOT, CONSOLIDATED_TABLES) currently live in
migrate.py. Either duplicate them in cold_pack_metadata.py (fast)
or factor into arborist/multi_shard.py (cleaner, also serves
#000066 graft mode). Shared module is more honest.

Prerequisite for #46 (genesis on 3090 from cloud). Without this,
genesis is a 2-step α-kludge (hydrate-then-reshard) that wastes
~30 min and treats packed shards as if from an arbitrary topology.

Index entry bumped; next-id 67→68. Per-ticket spec doc to follow
when the implementation gates open.
2026-05-26 16:08:49 -04:00
514dcd8342
#000065 closed: production reshard landed; record in corpus-history
2026-05-26 19:47 UTC. ~94 min wall. 3,468,226 globally-unique docs +
6,235,588 chunks + 90,592,990 edges + 3,468,403 audit events re-routed
from non-deterministic spray-by-ingest-order layout to canonical
content-hash M=4 layout (shard_idx = int(document_root[:8], 16) % 4).

Final state:
  per-shard doc uniformity within ±0.04% (theoretical max ±0.05% for
    first-32-bit SHA-256 prefix)
  audit chain consolidated to shard 000 via Option A (re-sorted by ts,
    re-chained; bodies preserved unchanged; tail event type=reshard
    carries plan+result body, hash 8da3aa19…)
  on-disk sizes: 000=11.0 / 001=8.8 / 002=8.8 / 003=8.8 GB
  validation: chunks delta 176 (0.003%) + edges delta 547 (0.0006%)
    are cross-shard dupes from re-ingest history, collapsed by
    INSERT OR IGNORE; within the 1% tolerance gate
  smoke queries: Barack Obama / YouTube / Albert Einstein all
    returned proper evidence from correct (hash-routed) shards
  chain-check-shards: 0 breaks on every shard

Two mid-flight defect fixes (also committed):
  04edff7: derivations.src_root FK guard fired on legitimately
    cross-shard refs → writer connection PRAGMA foreign_keys = OFF
  c86d5ac: WAL accumulated ~37 GB across passes (SQLite auto-checkpoint
    blocked by open reader cursors) → _checkpoint_truncate between
    phases. Production migration was rescued mid-flight by manual
    sibling-connection wal_checkpoint(TRUNCATE) freeing 27.7 GB.

Closes #000065 in both the index and the per-ticket file. The
per-ticket design doc stays open as a design-log artifact (its
content is still the right reference for the next reshard / for
graft mode #000066).

Follow-on tracked as tasks #44–#47:
  #44 re-pack post-reshard shards into DO Spaces (current bucket
      packs are stale, still in pre-reshard topology)
  #45 verify bucket pack hydration is deterministic against the new
      content-hash layout
  #46 genesis a fresh peer on 3090-ai.foxhop.net from cloud — first
      real SPV-wallet end-to-end test
  #47 retire stale pre-reshard bucket packs after #46 confirms
2026-05-26 15:51:20 -04:00
f4397a9217
#000066: cold-pack overlay/graft mode (pack-as-package)
Scaffold-only ticket. Captures the architecture for taking the
#000061 cold-pack format and adding a second mode beside hydrate:
overlay an existing pack onto a populated shard set ("graft").

Surfaced while running the #000065 reshard cutover and fox extended
the design: each pack carries a `corpus_name` field
(wikipedia-2010, wikipedia-current, arxiv-cs, ...), making
`arborist cold graft wikipedia-current` feel like `apt install`.

Three concerns analysed:
  doc/chunk/edge overlay   trivial (INSERT OR IGNORE on content-
                           addressed PKs collapses dupes)
  FTS5 overlay             trivial (new chunk_ids → new fts rows)
  audit chain overlay      the only hard part — three approaches:
                           A graft receipt (chosen): one event in
                             host chain carrying pack_hash +
                             event_count + first/last hashes; pack
                             file is the durable witness; zero
                             schema cost; aligned with v8/v9
                             witness pattern
                           B re-chain everything: rejected — graft
                             is frequent so invalidating external
                             refs is wrong tradeoff (different
                             story from the one-time reshard)
                           C chain forest with chain_id col: right
                             answer when graft dominates lifecycle
                             but premature now

Long-game payoff: mesh-peer-corpus-merge. Two peers diverge over a
partition, each carries packs the other lacks, reconciliation =
exchange + graft what's missing. Makes "mesh of arborists"
coherent rather than "fleet of arborists."

Scaffold gated on (a) #000065 lands+stabilises, (b) a second
corpus exists to graft, (c) at least two peers want to exchange.
No code until then; the design lock is what the ticket buys.

Index bumped Next ID 000066→000067.
2026-05-26 14:09:07 -04:00
3aae8119a6
#000065 step 1: routing helper + meta field + pre-migration snapshot
Three pieces, all read-only or additive — no shard mutation, no
schema-version bump:

1. shard_for_document(document_root, M) in arborist/document.py.
   Pure function: int(document_root[:8], 16) % M. 22 tests cover
   determinism, range-bounds, near-uniform distribution (±5pp at
   N=20k), and seven lock-in fixtures so peers will disagree
   loudly if anyone changes the formula.

2. corpus_shard_count meta field + get/set helpers in store.py.
   Lives in the existing key/value meta table; SCHEMA_VERSION
   stays at v9.8.0 (the DDL doesn't change and source_root is
   layout-independent, so cache records survive a reshard).
   Legacy shards (without the field) return None; reshard tool
   populates it on every target shard at migration time.

3. Pre-migration snapshot captured to
   bench/results/pre-migration-snapshot.json:
     docs        3,468,392  (3,468,226 globally unique)
     chunks      6,235,764
     edges      90,593,537
     audit       3,468,403
   This is the reference set post-reshard row counts must match.

4. Audit-event extraction script writes all 3.47M events from
   all 4 shards to /tmp/audit-events.ndjson (2.0 GB) for the
   Option-A canonical-chain consolidation step. Verifies chain
   integrity on extract — all 4 source chains report 0 breaks.

5. Fixed a wrong chunk count in docs/corpus-history.md
   (had ~3.54M/shard; actual is ~1.56M/shard) and added the
   edge-count column (~22.6M/shard, 90.6M total). 6.24M chunks
   total, not 14.12M.

Tests: 29 new pass (22 routing + 7 meta). No existing tests
touched.
2026-05-26 13:13:44 -04:00
0ddff43142
docs: capture Wikipedia 2010 ingest origin (the 100-min, 4-way parallel run)
The original ingest of Wikipedia 2010 into fox's 4 production shards
was 2026-04-27 21:33-23:13 UTC — ~100 minutes wall, 4-way parallel,
3.47M docs / 14.12M chunks. Captured here because the audit chain is
the only durable record but querying 3.47M rows to recover the
headline number is friction; one line in a doc removes it.

Also informs #000065 reshard planning: ingest rate ceiling on real
XML workload is ~2,350 chunks/sec aggregate (4-way), vs the
~6,400 chunks/sec the M-sweep bench measured on the 2003 cur dump
(which skips XML parsing). The teleport-style reshard should beat
both ceilings because it's just SQLite INSERT throughput, no XML
parse + canonicalize + edge extraction.

New file: docs/corpus-history.md. Indexed in CLAUDE.md docs section.
Append-only convention; future migrations + cold-pack runs add
entries here so the operator log isn't only in the audit chain.

Derivation query (sqlite3 audit_events) embedded in the entry so
future re-derivation is one copy-paste.
2026-05-26 12:48:12 -04:00
967fedbbe0
#000065: pin M=4 + bench script + SQLite-alternative decision tree
Pinned the canonical shard count at M = 4 based on real-Wikipedia
ingest + query benchmark (bench/shard_count_sweep.py). Captured the
"when does SQLite stop being the right substrate" decision tree so
future operators know what bench would justify a fork or replacement.

Bench numbers (Wikipedia 2003 cur dump, 2000 docs, 4 cells of
M ∈ {1, 2, 4, 8}, 50 FTS queries per cell):

     M   chunks/s    q_p50_ms    q_p99_ms   attach_ms
     1    3,648        0.05        0.20        1.61
     2    5,649        0.03        0.19        3.24
     4    6,405        0.07        0.30        9.00
     8    6,959        0.03        0.28        9.65

Key observations:
- M=1→M=2 is the biggest ingest win (+55%). Most gain happens there.
- M=2→M=4 is +13%. M=4→M=8 is only +9% — diminishing returns.
- Real wikitext canonicalization is per-worker Python CPU bound, not
  SQLite-writer-lock bound. More shards don't unlock more CPU.
- Query p50/p99 is flat across M within noise (50 queries small).
- ATTACH cost grows linearly: 1.6 / 3.2 / 9.0 / 9.7 ms.

Why M=4 specifically:
- Captures 92% of peak ingest throughput (6,405 / 6,959).
- 6 ATTACH slots free under SQLite's 10 ceiling for aux DBs
  (qa.db, snapshots.db, selfmodel-chain.db, crawl_*.db, future
  mesh_*.db) — comfortable headroom. M=8 leaves only 2 slots.
- Mobile-tolerable: phone NAND attach is 5-10x slower than NVMe;
  M=4 = 45-90 ms cold start (instant), M=8 = 50-100 ms (sluggish
  with no headroom).
- Matches fox's current 4-shard layout = cheapest migration.

Decision tree for when SQLite stops being right (full text in
ticket §"When the SQLite-default substrate stops being right"):

A. ATTACH ceiling pressure (auxiliary DBs grow past 5) → bench
   forked SQLite with SQLITE_MAX_ATTACHED=125, M ∈ {16, 32, 64};
   if attach cost stays linear past M=10, fork viable but pays
   permanent "no longer stock sqlite3" tax.

B. Ingest hits >10k chunks/s sustained ceiling → first tune
   page_size / WAL checkpoint / mmap_size / synchronous. If
   tuning gets 2-5x, stay on SQLite. If still ceiling-limited,
   candidates: DuckDB (columnar, MVCC, FTS), libmdbx (B+tree no
   FTS; we'd build it). In-house DB rejected without specific
   failure of those.

C. Federation needs multi-writer-same-shard → SQLite writer-lock
   serializes peers, becomes federation bottleneck. First try
   leader-election (single-writer-per-shard with WAL replication
   to followers). If true multi-writer required, SQLite is wrong;
   candidates: FoundationDB, CRDT-on-KV-store. DuckDB does NOT
   solve this — its MVCC is single-process.

Honest verdict: for current arborist workload (single-writer-per-
shard, read-mostly federation), stock python3 sqlite3 is the right
substrate. None of A/B/C are close to firing. The bench discipline
exists to know what to measure when something changes.

bench/results/shard-count-sweep-2026-05-26T16-20-48Z.csv (synthetic
baseline) + 2026-05-26T16-31-34Z.csv (real Wikipedia) committed as
the load-bearing measurement for the M=4 choice.
2026-05-26 12:40:48 -04:00
fb38212fe8
docs: #000065 — correct re-ingest framing to teleport (content-addressed rebalance)
fox caught the imprecision: "the shards are teleported if we fix this
because we know the shard a doc will end up in."

Re-ingest = re-read source files, re-canonicalize, re-chunk, re-hash.
Hours-to-days from Wikipedia dumps.

What's actually needed = content-addressed rebalance. Every row in
the corpus is already addressed by content (document_root, leaf_hash,
merkle_nodes.hash, audit_event_hash). Migration reads existing rows,
computes new_shard_idx via the routing function, INSERTs into the new
M shards. No source-file work, no canonicalization, no LLM.

Updated the ticket's "Migration story" section with the per-table
teleport recipe:

  documents:            move by document_root → new shard
  chunks (+content):    follow doc to its new shard, re-assign chunk_id
  chunks_fts:           rebuild per new shard from chunks.content
  merkle_nodes:         move with document_root
  edges:                move by src_root
  concept_relations,    move by content-derived parent
    derivations,
    providence_cache,
    citation_aliases,
    term_aliases:
  audit_events:         ALL → shard 000 (canonical), re-numbered + re-hashed
  snapshots, mesh_*:    canonical shard 000

Audit chain handling: chose Option A (canonical shard 000) over
Option B (split-by-subject_root). Preserves global event ordering,
re-hashing happens once at migration time. The alternative loses
cross-shard event ordering for falsification + replay reasoning.

Estimated wall: ~20-40 min I/O-bound on current corpus
(35 GB across 4 shards → ~35 GB across 8 shards, moves once).

Hard discipline added: move into ~/.arborist/shards.v2/, keep
originals as rollback, atomic dir-swap when verified. Mistake in
routing function = corrupted federation, recoverable only by going
back to the originals.
2026-05-26 12:11:25 -04:00
7f29ee91e6
docs: open #000065 — canonical shard count + content-hash routing
Surfaced while sizing #000061's federation story. Today shard count
conflates two roles:

  - producer ingest parallelism (wants = vCPU count)
  - consumer ATTACH fan-out (capped at SQLITE_MAX_ATTACHED=10)

On default Python sqlite3, the ATTACH ceiling is 10 and can't be
raised without a custom sqlite3 build (which violates CLAUDE.md's
"python3 + venv + sqlite3 is enough" property). Producer with 16
shards → consumer fails to attach the 11th, federation silently
breaks.

Design: introduce M = canonical shard count (corpus-wide constant,
default 8) decoupled from N = ingest workers. Document → shard
assignment becomes content-deterministic:

    shard_idx = int(document_root[:8], 16) % M

Same input → same output across every peer. Today's "spray by ingest
order" is non-deterministic across peers — two peers re-ingesting
the same corpus put the same document_root in different shards. That
weakens federation more than it should.

Migration hard-constraint (fox: "this implies we will need to
reprocess all our data into shards"): re-ingest required. Current
layout is sprayed by ingest order; post-ticket is sprayed by content
hash. Two layouts are incompatible by construction. Captured in
ticket §Migration as the load-bearing operational note.

Phases laid out (0-4: design lock → read path → ingest path →
pack-restore → corpus migration tool). Open audit-chain re-numbering
question (per-shard event_hash chains break when rows rebalance
across shards). Kept as one ticket — do-not-proliferate.

Scaffold only. No code yet — design lock first.

Next ID bumped to 000066.
2026-05-26 11:59:05 -04:00
576cb0eeaf
#000061: fold 3 gaps from Dav1d review (manifest/latest, license_class, cold_pending)
Dav1d's reviews of #000061 (Response A + Response B/FINAL in
~/Downloads, 2026-05-26) flagged a long list of items — most already
shipped in the SPV-split work. Three were genuine gaps worth folding
into #000061 before close:

Gap 1: manifest/latest pointer for new-peer discovery.

  A fresh peer doing `cold list` got a list of metadata-pack hashes
  but no obvious "which one is current for shard X." Added
  get_latest_pointer + update_latest_pointer to the backend ABC.
  push_pack writes manifest/latest.json on every successful metadata
  pack push (read-modify-write keyed by snapshot_root). Mutable
  pointer; content addressing of the packs themselves preserves the
  trust root. Last-writer-wins on contention.

Gap 2: license_class field + producer-side refuse for public buckets.

  Maps documents.source_type to a license bucket (wikipedia_cur /
  textbook_tex → public_redistributable; html / grok / vcs → unknown;
  anything else → unknown). Strictness order: public < unknown <
  private. compute_shard_license_class() walks DISTINCT source_type
  in documents. push_pack now refuses to upload if the shard's
  strictest license is more restrictive than the operator's
  allow_license_class (default: public_redistributable). The
  metadata pack's manifest carries _license_class so consumers /
  auditors can see the producer's classification without inspecting
  source documents. ValueError on refusal — the bucket ACL is the
  operator's call, but arborist refuses to participate in a
  licensing/membership leak unless explicitly opted in.

Gap 3: cold_pending table for resumable uploads.

  Killed mid-upload, push_pack left orphan multi-GB tempfiles in
  /tmp with no DB trace. Added schema:

    CREATE TABLE cold_pending (
        tempfile_path TEXT PRIMARY KEY,
        pack_hash TEXT NOT NULL,
        kind TEXT NOT NULL,
        backend_endpoint TEXT NOT NULL,
        backend_bucket TEXT NOT NULL,
        object_key TEXT NOT NULL,
        started_at INTEGER NOT NULL,
        state TEXT NOT NULL DEFAULT 'pending'
    );

  push_pack INSERTs a row before each upload + DELETEs on success.
  A killed process leaves the row pointing at the orphan tempfile;
  a recovery script (future) reads cold_pending, checks bucket for
  the object, either deletes the row + tempfile (success was just
  unreported) or re-uploads from the tempfile if it still exists.
  Matches the same pattern as the audit chain — explicit state
  rows beat inferring from chunks.content IS NULL.

Sibling tickets opened for the larger items the reviews flagged
(scaffold-only, no code; opening them captures the design in the
log without proliferating, per CLAUDE.md):

- #000063 Cold-object private-ciphertext mode (mesh-keyed object
  keys for non-public corpora on public-read buckets). Needs mesh
  group-key ABI + real non-public corpus before code.

- #000064 Cold-object operations toolkit (verify / diff / doctor /
  repair-fts / gc-plan CLI + expanded audit-event taxonomy).
  Bundled so the audit-event vocabulary gets one design pass.

5 new tests:
  test_gap2_license_gate_refuses_unknown_class_to_public_bucket
  test_gap2_license_class_in_metadata_manifest
  test_gap1_latest_pointer_resolves_metadata_pack_per_snapshot
  test_gap3_cold_pending_clears_on_successful_upload
  test_gap3_cold_pending_records_inflight_upload

26 cold-object + 7 evict tests pass (33/33 green incl. boto3 wire).

Next ID bumped to 000065.

Live v3 SPV corpus run (bmq47x6t3) completed cleanly during this work.
Will report sizing + memory profile in the next message.
2026-05-26 10:50:57 -04:00
eba08beb61
docs: fold Dav1d review (2026-05-26) into ticket stack
Three doc-only housekeeping items from Dav1d's de-novo reconciliation
of the architecture stack (no code changes; the active build is
#000061 cold-pack work, which is unaffected by this review):

1. Accepted-error formula. Dav1d corrected p_raw × (1-d)(1-r) to
   p_raw × (1 - dr) where r is conditional on detection. Searched
   docs/ and arborist/ — the wrong form does NOT appear in this
   tree (it lives in the external recursive-truth-maintenance / RCO
   manuscripts Dav1d cited). Nothing to fix here; recorded for the
   manuscript authors.

2. #000060 H-ABCDEFG split. Folded the M/C/X axis split into the
   harness scope: M (mechanism — does the substrate's plumbing work),
   C (capability — does it improve task performance), X (external
   adversarial — does it generalize outside author-designed fixtures).
   ACCEPT requires clearing all three. Without X, the harness risks
   self-validating benchmark theology — passing tests its own designers
   picked. Tagged at fixture-definition time; aggregator emits per-axis
   pass rates + combined ACCEPT verdict. Doesn't change the existing
   BatteryResult row schema.

3. #000062 Mechanistic Witness — new scaffold-only ticket. Specifies
   a content-addressed MechanisticWitnessRoot over (model_config,
   capture_policy, contrastive_prompts, features/neurons, intervention
   result, behavioral delta, safety policy) as a DIAGNOSTIC sidecar
   feeding SelfModel + benchmark fixtures. Four hard guardrails:
   diagnostic-only by default; sandbox intervention only; no production
   steering without governance ACCEPT via #000060 M+C+X; feature labels
   never become semantic proof. No code until a real falsifier use case
   exists + guardrails are CLAUDE.md rules + #000060 harness gates
   promotion. The dual-use risk (Pan et al. 2025: 0.1% MLP ablation
   breaks refusal in 72B models) makes governance-first framing
   load-bearing.

Next ID bumped to 000063.

No code change to arborist/. The in-flight v3 SPV corpus pack
(bmq47x6t3) continues unaffected.
2026-05-26 10:22:17 -04:00
50324b4d7a
#000061: pack format v2 — self-sufficient new-peer hydration
v1 packs (chunks-only) were under-engineered: a new peer landing on
v1 packs would have chunk bodies indexed by leaf_hash but no documents
table, no audit chain, no merkle interior, no edges — couldn't actually
hydrate. fox: "isn't what I wanted you under engineered..."

v2 packs ship every load-bearing shard table alongside chunk bodies in
the same tar.zst:

  manifest.jsonl                          # chunk catalog (unchanged)
  tables/documents.jsonl                  # array-per-line columnar JSONL
  tables/chunks.jsonl                     # without content column
  tables/merkle_nodes.jsonl
  tables/edges.jsonl                      # FAN-IN restructured
  tables/audit_events.jsonl
  tables/derivations.jsonl
  tables/concept_relations.jsonl
  tables/concept_token_idf.jsonl
  tables/providence_cache.jsonl
  tables/citation_aliases.jsonl
  tables/term_aliases.jsonl
  tables/snapshots.jsonl
  tables/document_http_meta.jsonl
  blobs/<hash[:2]>/<hash[2:]>             # raw UTF-8 chunk bodies

Two compression strategies inside the pack:

1. Array-per-line JSONL ({"_columns": [...]} header line + ["v1","v2",...]
   data lines) drops ~30% of uncompressed bytes vs object-per-row JSONL.
   zstd recovers most of that on its own, but smaller uncompressed
   footprint also speeds up stream-restore.

2. Edges fan-in restructure at pack-build time: 22M rows of
   (src_root, edge_type, dst_root, dst_uri, anchor) → ~500k unique
   (dst_uri, edge_type, anchor, dst_root) groups with src_roots as an
   array. ~5-10x compressed savings on the dominant table. Reverses on
   unpack into the per-edge live schema. Live queries unchanged.

NOT shipped (per-peer state): mesh_*, selfmodel_*, capital_ledger,
memory_*, controller_events, fork_score_branches, adapter_loss_reports,
falsifications, schema_meta, meta. NOT shipped (rebuildable): chunks_fts*,
documents_fts* — restored from chunks.content + documents.title on
unpack.

push_pack no longer appends `cold_pack_pushed` to the audit chain.
That event leaked into the next push's audit_events.jsonl dump and
broke the "two writers at the same corpus state produce identical
pack_hash" determinism property. The bucket/disc file IS the receipt;
the snapshot_root pinned inside the pack metadata binds it to a corpus
state. No load-bearing consumer of the audit row.

pull_pack restored to handle both v1 (chunks-only) and v2 (tables +
chunks) packs. For v2 it extracts tables/*.jsonl to a temp dir,
calls restore_shard_metadata (which INSERT OR IGNOREs into the live
schema and expands edges back to per-edge rows), then fills chunk
content for every leaf_hash in blobs/. Idempotent against populated
DBs (INSERT OR IGNORE all the way down). Self-cleaning temp dir.

Sizing measured 2026-05-26: ~2.1 GB per shard pack compressed (chunk
content 1.78 GB + metadata ~0.3 GB), ~8.5 GB total across 4 shards.
~20% more than v1 chunks-only for self-sufficient hydration.

24 cold-object + evict tests pass (+1 new test_push_pack_v2_hydrates_fresh_empty_db
that builds a pack from a populated DB and unpacks into a completely
empty DB to verify all tables restored). Full suite: 2558 passed,
28 skipped, 1 xfailed.
2026-05-25 22:21:45 -04:00
727cb1bd96
feat: #000061 cold-pack distribution tier (boto3 S3-compat + DVD-R safe-fit)
Ship arborist corpus state to new peers and DVD-R archival via
point-in-time tar.zst packs. One artifact serves both channels —
bucket+CDN delivery and physical-media archival.

Bucket holds packs only. Pack key = hash_leaf(manifest_bytes), so same
chunk set on two writers produces the same pack_hash and upload is
idempotent. Each pack pins the corpus snapshot_root it covers in audit
+ result body — packs are delayed snapshots, not live mirrors;
falsifications between repacks produce new pack_hashes.

stream_packs runs streaming zstd over tarfile, peeking compressed-buffer
size after each chunk via FLUSH_BLOCK (preserves dictionary). Default
cap 4_400_000_000 — 4.4 GB DVD-R safe-fit, ~6.5% buffer below the
4.7 GB marketing capacity to absorb ISO9660 overhead, growisofs
lead-in/lead-out, media variance, and drive-edge refusal. Each disc
fills to ~4.4 GB recorded data, not the ~1.5 GB an uncompressed cap
produced.

One backend class (S3CompatibleBackend via boto3 + endpoint_url) covers
AWS S3, DO Spaces, R2, B2, GCS S3-interop, MinIO. Optional dep
[object-store] = boto3>=1.34; dev extras pull moto for the wire test.
Voyeur: credentials via AWS_ACCESS_KEY_ID/_SECRET_ACCESS_KEY env or
~/.aws/credentials, never printed; only endpoint URL + bucket name
surface in logs.

CLI: arborist cold {pack,unpack,stats}. Makefile: cold-pack,
cold-pack-dvd (local-dir output for growisofs), cold-unpack, cold-stats.

Sizing for current shards (14.1M chunks, ~17 GB compressed): ~4 packs
at the default cap, ~\$0.34/mo DO Spaces storage, ~\$0.0001/fresh-peer
hydrate.

Always-on raw-UTF-8 leaf store (per ticket "Hard invariants") deferred
— packs-only for now, backfill later.

2557 passed, 28 skipped, 1 xfailed.
2026-05-25 20:23:44 -04:00
06e6c7a918
docs: 3 concepts diagrams + Python-library cookbook recipes
Address Grok's two minor-improvement flags on the docs.

New docs/diagrams/{three-layer-stack,cache-key-8dim,falsification-states}.{dot,svg,png}
embedded into docs/_source/concepts.rst — visual scaffolding for the
3-layer stack, 8-dim cache_key composition, and falsification state
machine (previously prose+tables only).

docs/_source/cookbook.rst gains a "Use arborist as a Python library"
section: open_store + ingest_documents, custom Source subclass,
audit-chain walk + verify, Merkle proof round-trip, programmatic
arborist.qa.query() with OpenAICompatibleClient + StubClient swap.

Every Python recipe smoke-tested against a scratch DB before publish.
make docs-api: 0 new warnings. make test: 2557 passed.
2026-05-24 14:12:26 -04:00
b6bb31a836
docs+code: ground §12 judge pipeline in the actual judge_code.py
The §12.1 pipeline I added was second-hand from benchmark-matrix.md
and got several things wrong against the code:
- listed 4 verdicts; actual is 5 (missing FABRICATED — the
  fabrication-vs-WRONG split that energy-cogs §5.5 leans on for the
  qwen-fabricates / hermes-abstains finding)
- "θ=0.85" was right by accident — but it's the code-judge-pinned
  _CODE_JUDGE_THETA_CONTRA constant, raised from the manifest 0.5
  default after measuring 114 FPs in the 0.5-0.75 band
- omitted the short-answer entity-grounding fast path (which runs
  BEFORE NLI per the 2026-05-19 Poland-Tusk smoke)
- omitted the HYBRID rescue ladder (NLI entail / entity rescue /
  2026-05-21 verbatim-quote-on-topic rescue)
- conflated WRONG and FABRICATED (the subject-in-gold split is what
  distinguishes "source has the topic but a different value" from
  "source silent on the topic")

Rewrote §12.1 grounded in `bench/judge_code.py:judge()` (its own
docstring at line 501-528 is the truth on rule order), with file:line
citations and the verdict-mapping in full.

Also fixed a real artifact-vs-doc drift INSIDE the judge: the
module-top docstring still claimed θ_contra default 0.5 and omitted
the short-path and the WRONG/FABRICATED split. Updated to match the
authoritative judge() docstring + current code.

No behavior change — docstring + benchmarks doc only.
2026-05-22 19:17:28 -04:00
7f5ef5c140
docs: surface qwen-vs-hermes cost bench + the judge in benchmarks orientation 2026-05-22 19:13:35 -04:00
a4e1dc9a10
feat: arborist.embed — supported library-embedding surface
A stable façade so another Python app can use arborist as a
content-addressed / Merkle / audit-chained store without the CLI or a
wire protocol. Import from arborist.embed, not internal modules, so
refactors don't break embedders.

Surface: open_store(path), ingest_documents(conn, docs), search(conn, q),
plus re-exported Document/Edge/Source/Hit/IngestStats. Core only
(python+sqlite3) — no extras. _IterableSource adapts a plain doc iterable
into the Source contract.

This is the seam for using arborist as neopig's optional provenance
backend: neopig produces Documents from crawled pages, arborist gives
content-dedup (document_root) + FTS5 + an append-only audit chain
alongside neopig's existing md5/FileVault storage. Docs in
docs/embedding.md. 6 tests pin open/ingest/dedup/idempotence/edges/search.
2026-05-22 13:03:15 -04:00
24c7596bc4
docs: web crawler guide — discovery, fast mode, dedupe, orphans
New docs/crawler.md covering the crawl path we actually run: BFS
same-host discovery, robots/feed/sitemap handling, polite vs --fast,
the shared-session + no-HEAD + crawl-delay-fix speedups, and the
content-addressed payoff. Leads on the two store-derived diagnostics:
duplicate detection (group by document_root — body, not URI) and
partial-overlap (shared chunk leaves), plus orphan finding
(sitemap − BFS-reached) and the planned crawl-report webmaster tools.
Honest pros/cons: orphans invisible to crawl by design, single-host,
no JS execution, --fast is anti-social off your own turf.
2026-05-22 07:38:37 -04:00
39f8aa1fb4
docs: fix pager duplicate-object + v8 short title underlines
- '.. class:: center' parsed as a Python class named 'center' (duplicate
  across one-pager + two-pager) -> '.. rst-class:: center' (styling, no
  object). Clears the duplicate-object-description warnings.
- two v8-consensus section underlines were shorter than their titles
  ('underline too short') -> extended to title length.
Pager + v8 pages now build with zero warnings.
2026-05-21 18:00:14 -04:00
1e5fb1c3a7
docs: remediate merkle-agi-dag-v7 RST (499 -> 62 build issues)
The page was a markdown+LaTeX paper dumped into .rst — 499 errors/warnings,
big chunks rendering broken. Mechanical, content-preserving fixes:
- markdown code fences (```lang) -> RST .. code-block:: (48 blocks; the
  dominant error source — RST read each ``` as an unclosed inline literal)
- display math [ ... ] -> literal blocks (34)
- code-block:: json -> text where bodies are schemas with <...>/[m,n]
  placeholders, not valid JSON (10; same as the v8 fix)
- escape inline | in prose (math like |Z|, |pred(v)|) read as RST
  substitution refs (37 lines; no pipe-tables in the file, so safe)
Residual 62 are scattered indented-math derivation lines RST treats as
block quotes — they still render, just warn; diminishing returns on an
advanced/optional theory page.
2026-05-21 17:58:38 -04:00
0750a86e21
docs: fix malformed floor table in merkle-agi-v8-consensus
The simple-table (=== separators) had a wrapped multi-line cell that
docutils rejected as malformed -> the floor table rendered broken on the
live site. Converted to a list-table (alignment-proof). Also switched the
proposer-submission block from 'code-block:: json' to 'text' — it's a
schema with <...> placeholders, not valid JSON, so the json lexer warned.
Page now builds with no errors/warnings on these blocks.
2026-05-21 17:32:42 -04:00
da0d79d29e
docs: re-org nav so theory doesn't overwhelm practitioners
The Substrate group is Dav1d's formal Merkle-AGI research that drove the
design — valuable, but it sat third in the nav and read like required
reading. IA-only fix (no content touched):
- re-caption 'Substrate' -> 'Substrate theory (advanced)' + a preamble
  marking it optional (nothing in Getting started / API depends on it);
- reorder it BELOW the practical sections (now: Summary -> Getting started
  -> API -> Substrate theory -> Project);
- pull 'bench' out of Substrate into Getting started (it's the practical
  benchmark surface, not theory).
Practitioner path comes first; theory stays intact + credited, just last.
2026-05-21 17:29:01 -04:00
89ce211077
docs(L5): Reverse RAG framing + no-embeddings + per-1k COGS at $0.33/kWh
- Frame the solution as a Reverse RAG (Merkle Providence Reverse RAG) with
  a link to the whitepaper (unfirehose.com/merkle-providence-reverse-rag-
  whitepaper — note: published on unfirehose, not uncloseai).
- New differentiator: NO vector embeddings — retrieval is lexical-first
  (FTS5 BM25 + Merkle), dense-vector optional + off by default; embedding
  10M docs costs 10-100x more/doc + a vector index to store/maintain. A
  big part of why COGS is low.
- COGS framed per 1,000 answers, labeled @ $0.33/kWh (intro + diagram cost
  node). Cost node clarified: no embeddings, NO reasoning (reasoning is the
  thing that would cost 4-6x, which we skip). Retrieval node + mapping
  table updated to lexical-first / no vector index.
2026-05-21 15:49:12 -04:00
e8bc5c2220
docs: pack the L5 diagram tighter (ranksep 1.2 -> 0.4)
ranksep=1.2 over-stretched it vertically (1193x1483, lots of whitespace).
Drop to 0.4 + nodesep 0.25: 1202x1063, ~28% less area, no vertical sprawl,
stays roughly square. Width is floored by the widest node label; click-to-
zoom (zoom.js) covers reading detail.
2026-05-21 15:30:53 -04:00
2a37c6ec51
docs: click-to-zoom lightbox for diagrams (scroll-zoom + drag-pan)
Graphviz renders SVG as <object>, which swallows clicks and can't be
lightboxed. Vendored, dependency-free zoom.js converts each graphviz
<object> to a clickable <img> (crisp vector) and adds a fullscreen
overlay: click to open, scroll to zoom toward the cursor, drag to pan,
Esc / dbl-click / background-click to close. Works for any img.zoomable,
so future charts get it free. Degrades gracefully (no JS -> inline image
still renders). Wired via html_css_files / html_js_files.
2026-05-21 15:26:39 -04:00
5dd9c18f79
docs: make the L5 pipeline diagram portrait (ranksep=1.2)
TB alone left it landscape (1202x1101, h/w 0.92). Width is floored by the
widest node label (can't shrink without trimming labels), so bump
ranksep to stretch vertically: 1193x1483, h/w 1.24 — clearly top-down/
vertical for the docs column.
2026-05-21 15:19:34 -04:00
cc645a30b7
docs: vertical (TB) layout for the Google-L5 pipeline diagram
rankdir LR -> TB so the diagram reads top-down and fits the docs column
(roughly square ~1200x1100, fox: 'square is good') instead of a wide
horizontal strip.
2026-05-21 15:13:36 -04:00
1dfbe3a6bf
docs: add 'Solution: RAG pipeline for 10M docs, zero hallucination' (Google L5)
Graphviz DOT diagram of the arborist pipeline as the answer to the Google
L5 system-design prompt 'design a RAG pipeline for 10M docs with zero
hallucination'. Maps our components onto the canonical 10-box RAG design
and shows the three extensions that buy zero-hallucination + near-zero
cost: deterministic verifier (not a model confidence score) -> honest
UNGROUNDED; Merkle-bound cache that skips the GPU; measured energy COGS
(~$0.07-0.16/1k answers, non-reasoning). Includes the mapping table +
the 3.47M->10M scaling math (+77GB, sourcing/storage not redesign).

Enables sphinx.ext.graphviz (SVG output) + graphviz apt package on the
RTD build; adds the page to the Summary-pages toctree. Builds clean
(page renders, DOT validates via dot -Tsvg).
2026-05-21 14:55:01 -04:00
211bbb1daf
docs: draft COGS tweet — cost of a grounded answer (Hermes ~9c, Qwen ~16c per 1k)
Main tweet + follow-up (Merkle cache hit skips GPU, doesn't increment the
per-1k). Numbers are the measured claim_lattice figures from the energy
report; note attached to hold the arbitrage/forcing-function framing until
the value side is hardened (higher N + blinded judge).
2026-05-21 13:52:20 -04:00
105b890e41
docs(#000057): correct cost claim — <$0.10/1k-q is hermes-8B only, not qwen
$0.10/1k-q overstated the qwen-27B case. Honest range: ~$0.07-0.16 per
1,000 queries of GPU electricity — hermes-8B $0.07-0.09 (under a dime),
qwen-27B $0.12-0.16 (over a dime; claim_lattice dearer than quote from
more prefilled context). Fixes the §5.4 'either rig' claim.
2026-05-21 13:50:01 -04:00
53db4ad717
docs(#000057): add quality/value side + cross-model comparison to energy report
The report is now cost AND value (quality-per-dollar), not cost-only.

§5.5 quality delta: substrate-vs-solo (code judge, n=30) on numeral +
stale fixtures, hermes-8B vs qwen-27B-nothink. Substrate lifts both
2-13x and they nearly converge (hermes 18/21, qwen 19/26 grounded-
correct) — grounding comes from retrieval+verification, not parametric
size, so the base model matters far less. Bare-model failure styles
diverge (hermes abstains, qwen fabricates). Quality-per-dollar: ~18-26/30
grounded for $0.085-0.158/1k-q.

Honest caveats recorded: CORRECT=grounded-in-2010-corpus (not current);
the stale fixture is no longer post-corpus; the qwen thinking bug (39c040c)
that voided the first run and the judge strengthening (2d31866). §1
reframed; §8 repro + §9 next updated (post-2010 fixture, SOTA judge for
residue).
2026-05-21 13:44:56 -04:00
26e4db67d1
docs: corpus loaded is the 2010 Wikipedia snapshot, not 2003
fox 2026-05-21: two corpora exist (2003-05-16 + 2010); the 2010 one is
loaded in ~/.arborist/shards (verified: 866K docs/shard, has Barack
Obama / YouTube articles a 2003 dump can't). CLAUDE.md Live-endpoints and
the energy-COGS report now state 2010; fabrication-bait fixtures target
post-2010 events. Historical closed-ticket prose left as point-in-time
records.
2026-05-21 12:36:20 -04:00
b44e9255b2
docs(#000057): add 3090/Hermes-8B rig, dollars, quant/precision confound
- §2 now a two-rig table: 4090/Qwen-27B-Q4_K_XL/llama.cpp (isolated) vs
  3090/Hermes-8B-FP8-Dynamic/vLLM (live/public). Spells out that the
  cross-model rate gap confounds FOUR variables (params, quant/precision,
  engine, GPU) — not '8B vs 27B' alone.
- §5.4 hermes results under live traffic. Method finding: the watt_bench
  window integral is unusable on a contended card, but the slope
  calibration survives clean (cancels the variable shared-load baseline)
  — so on shared/public cards use watt_calibrate, not the window integral.
  Rates: hermes 0.109/4.40 J/tok vs qwen 0.175/6.16; decode 35-40x prefill.
- Per-query DOLLARS both rigs @$0.33/kWh: a grounded substrate answer is
  <$0.10 per 1000 queries (hermes $0.085, qwen $0.158); hermes ~half qwen.
- §5.2 budget confound corrected to flag Hermes-tuning honestly (was
  rationalized). §9: fixed-budget apples-to-apples re-run + per-model
  budget tuning added as next steps.
2026-05-21 12:17:43 -04:00
9d9e530466
docs(#000057): energy-COGS report — separated prefill/decode, n=30, Dav1d-ready
Full report for Dav1d: qwen-nothink on the dedicated 4090. Headline —
prefill 0.175 J/input-tok ($0.016/M) vs decode 6.157 J/output-tok
($0.564/M), decode 35x dearer per token. The substrate prefills ~6.6k
input tok/query (vs solo ~52, 127x): ~67% of its GPU energy is reading
the retrieved context, not generating. Per-query 1719 J (substrate-CL)
vs 95 J (solo) = $0.16 vs $0.009 per 1k queries; calibration predicts
measured within ~5%. Real cost is CPU latency, not GPU watts.

Documents the full methodology + the corrections that got here
(contamination -> isolation; blended mean-W -> measured states; gross
-> not-attributable; per-token -> separated input/output; len//4 ->
real usage), threats to validity, reproducibility (commits, config hash,
persisted samples), and next rigs (3090+Hermes, reasoning, prefill-cache
study).
2026-05-21 11:50:05 -04:00
32aeb37086
fix(#000057): GPU COGS = generation only — retrieval/verify don't touch the card
fox 2026-05-21: 'we dont touch card during retrieval'. Retrieval + verify
are CPU/SQLite on the orchestrator; the GPU is idle (at the shared, always-
on model-resident floor) during them. So the substrate does NOT 'hold the
card' through its wall-clock — the gross window integral over-counts by
charging that always-on floor for the seconds we spend retrieving (energy
that exists regardless of the query; the card serves other traffic then).

Correct attribution: the GPU cost of a query is its GENERATION energy only
(the marginal — burst above the serving floor). Relabel: marginal is the
headline GPU COGS; gross is demoted to a reference 'window total, not
query-attributable'. Print + energy_cogs docstring + stock-v1-config doc
updated. No math change (marginal was already right) — this corrects the
narration. Measured qwen-nothink/4090: substrate GPU COGS is LOW
(claim_lattice $0.21/M-tok, quote $0.83) — its real overhead is latency
(CPU retrieval), not GPU watts.
2026-05-21 11:07:37 -04:00
1aff09f021
feat(#000057): energy-COGS layer for watt_bench — marginal vs gross $/1k-tok
fox 2026-05-21: compute cost-of-goods-sold by kWh vs tokens, with the
three power states (idle / warm-idle / generation) MEASURED per
card×model×server — never hardcoded (his 40/127/380 W were illustrative
of one 3090). The only operator input is --price-per-kwh (default 0.33
USD/kWh, a configurable site rate).

energy_cogs() (pure, unit-tested) decomposes measured generation energy
against the measured warm-idle baseline:
  * gross    — all measured joules over the window (all-in, includes the
               warm-idle cost of keeping the model hot, amortized).
  * marginal — joules ABOVE warm-idle: what one more request's burst
               actually costs (clamped >=0).
kWh = J/3.6e6; $/1k-tok is the unit that compares to API pricing. Both
surface per cell + a COGS print line.

watt_bench's arborist arm now loads the frozen bench.stock_v1 policy
(--answer-mode, drift-guarded on non-reasoning) so cost is measured for
the SAME substrate the campaign grades. Cells record
window_start/end_unix so a post-hoc load_monitor queue-depth cross-ref
can flag organic-traffic contamination on the non-isolated single-slot
endpoints. 6 COGS tests; full suite 2534 passed.
2026-05-21 10:19:41 -04:00
1a7f8eb4ea
feat: STOCK V.1 two-mode config family + wire treatment arms to the pin
fox 2026-05-21: characterize substrate-ON under BOTH answer shapes, so
answer_mode is a swept axis, not a single pinned value.

stock_v1.py now exposes STOCK_V1_POLICIES{quote,claim_lattice} +
STOCK_V1_GOVERNANCE_HASHES (quote 5b6ca4c5..., claim_lattice 036a4c79...),
policy_for(mode), and assert_not_drifted(mode). Shared pins (crosslang
OFF, repair OFF, quantifier dry-run, metacognition label-only,
soft-preflight OFF, claim cap 12, v2-acronym-aware) are frozen
identically across modes.

Wire the treatment arms to the pin (the consumer-side step that makes
the freeze real):
  * control_ab    --answer-mode {quote,claim_lattice}
  * control_sweep --arborist-answer-mode {quote,claim_lattice}
Both default claim_lattice (prior behavior), call assert_not_drifted on
non-reasoning runs (halts the sweep if DEFAULT_QUERY_POLICY drifts), and
load the frozen policy_for(mode) instead of an inline
dict(DEFAULT_QUERY_POLICY, ...). Reasoning refs (phase 3) keep their
documented JSON overrides and skip the assert by design (different hash).

jaggedness is left standalone — it is a mode-agnostic retrieval
instrument, coupling it to the answer-policy freeze adds friction with no
correctness gain. Full suite 2528 passed.
2026-05-21 10:15:26 -04:00
e227bbc32a
feat: pin STOCK V.1 substrate — frozen substrate-ON config for the GPU campaign
Before the multi-day campaign (hermes 3090/4090 -> qwen 3090/4090 ->
reasoning variants) the substrate-ON treatment arm must NOT drift. It
previously inherited DEFAULT_QUERY_POLICY implicitly, so any mid-run
edit would silently change what 'substrate-ON' means.

bench/stock_v1.py snapshots DEFAULT_QUERY_POLICY + re-asserts the
load-bearing pins (answer_mode=quote, crosslang OFF, repair OFF,
quantifier caps dry-run, metacognition label-only, soft-preflight OFF,
claim ceiling 12, v2-acronym-aware), then hashes the whole effective
dict. assert_not_drifted() fails loudly if that hash ever changes —
re-pinning is a deliberate fox-gated V.2 bump, never silent. The whole
campaign is identified by one governance_policy_hash
(5b6ca4c5...aade4e). Non-reasoning + non-distributed are harness axes
(reasoning -> phase 3, mesh -> later fork), not policy fields.

docs/stock-v1-config.md documents V.1, substrate-OFF (control_ab arm A),
the campaign matrix, and the energy-COGS companion (#000057) — whose
power states (idle / warm-idle / generation) are MEASURED per
card+model+inference-server at runtime, never hardcoded; only $/kWh is
an operator flag.
2026-05-21 09:43:17 -04:00
9d0015b4d4
feat(#000060): bench/jaggedness.py — deterministic retrieval jaggedness instrument
v1 of the same-model substrate-delta harness's non-jagged metric.
For one corpus title, surface-perturb its question (numeral / accent /
hyphen / honorific / amp / brit) preserving the referent, then ask
whether retrieval surfaces the SAME target for canonical vs perturbed
phrasing. J_norm = XOR disagreement rate @k (lower = less jagged);
graded mean |Δrank| catches rank instability the binary metric misses.

Pure query --dry-run: no LLM, no verifier, no judge, no n=3 noise, no
5pp floor — the recall_at_k discipline. Reuses recall_at_k.probe +
mine_questions._surface_variant. Feeds #000012 ForkScore
ΔJaggednessReduction. A-vs-C answer-quality arm already exists under
#000057 (control_ab/control_sweep) — not rebuilt. Curvature + LLM-arm
jaggedness delta remain open (ticket §8).

make bench-jaggedness JAGGED_LIMIT=40 JAGGED_K=8
2026-05-21 08:38:07 -04:00
7a43ceb699
docs(#000059): bounded-ingestion hard constraint on the claim graveyard
fox: a graveyard that keeps every wrong answer forever grows unbounded
like cancer and is counter to constraint-optimization. Bake in the
bound:

- earn-to-enter (recurrence-gated) — a failure earns a tombstone only
  when its canonical claim-family re-fails; one-offs dropped.
- fingerprints not transcripts (UTXO-set analogy) — store
  canonical_claim_family|falsifier_root|failure_class, prune bulk text.
- decay/compact to steady-state — evicts like a surface, never a core.
- off the hot path — dedicated graveyard shard, bloom-filter burden
  check only.

Gossip-group falsifier admission inherits the same discipline:
difficulty-adjusted stable-rate ingestion (BTC block-rate target) +
per-window budget (#000036), enforced in #000012/mesh. BTC lesson is
bounded self-regulating ingestion, not store-everything. If it cannot
be bounded to a steady state, the graveyard is not built.
2026-05-20 19:28:48 -04:00
d4480cddb7
docs(#000058,#000059,#000060): ticketize Dav1dPrometheus protocol-layer report
Three tickets from the 2026-05-20 Dav1dPrometheus "Protocol-Layer AGI"
working report (held outside the repo; referenced not committed):

- #000058 cache_key_9 verifier-policy mandatory-vs-legible decision +
  doc reconcile. Records the five-step-#1 correction: verifier fields
  already fold into governance_policy_hash, so the 9th dim is audit
  legibility not a correctness gap.
- #000059 admission discipline: claim-graveyard burden-shift +
  self-providence quarantine (guards the existing ingest-self-providence
  self-confirmation loop).
- #000060 H-ABCDEFG same-model substrate-delta harness (jaggedness +
  curvature); curvature-aware ForkScore folded into #000012 Phase 2,
  not spawned as a sibling.

Reconciles CLAUDE.md cache_key invariant (8-dim -> 8 + optional 9th).
Next ID 000058 -> 000061.
2026-05-20 19:27:08 -04:00
69a9642296
docs(#000057): capture known-good serving invocations for the salt buildout
The exact llama.cpp (qwen/4090) and vLLM (hermes/3090) launch commands,
recon'd 2026-05-20, so the foxhop-states salt states can be written
accurately rather than guessed. Notes the convention (salt manages the
systemd unit; engine binaries + model artifacts stay manual on
/mnt/data as documented prereqs) and the live-hermes cutover constraint
(keep >=1 hermes online; qwen is expendable).
2026-05-20 15:20:34 -04:00
ab8df76792
feat(#000057): CPU wattage (RAPL) in watt_bench + expanded cost/quality matrix doc
Toward fox's next goal: score the full serving stack on quality AND
cost — {qwen, hermes} × {llama.cpp, vLLM} × {3090, 4090} × {solo,
arborist}, measuring CG% + GPU watts + CPU watts + joules/answer per
cell.

watt_bench.py — adds CpuSampler (Intel RAPL package energy via
/sys/class/powercap/intel-rapl:*/energy_uj). RAPL exposes a cumulative
microjoule counter, so energy-over-window is an end-minus-start diff
(handles wrap) — more accurate than integrating instantaneous power.
Sums multi-package. energy_uj is root-only by default (PLATYPUS /
CVE-2020-8694), so it degrades to available=False when locked;
--cpu-energy-cmd 'sudo cat {path}' supplies a privileged reader when a
sudo rule exists. Each cell now reports gpu/cpu/total joules-per-
question + gpu joules-per-token; the report records cpu_rapl_available.
Verified: graceful degradation when locked; RAPL diff math (1->4 MJ uJ
= 3.0 J, exact).

benchmark-matrix.md — expands the cost section to the full 16-cell
(model × engine × GPU × arm) design, the per-cell metric set (quality +
GPU + CPU energy), the serving-stack inventory from 2026-05-20 recon
(4090=qwen/llama.cpp, 3090=hermes/vLLM — each box has one engine + one
model today), and the buildout gap (vLLM+qwen, llama.cpp+hermes, cross-
GPU models). Notes idle-floor asymmetry (hermes/3090 ~127W vs
qwen/4090 ~20W) as a real optimizer input.

Harness is ready; the serving-config buildout + RAPL perm grant are the
remaining (ops, fox-directed) prerequisites to run the full matrix.
2026-05-20 14:45:49 -04:00
5260161e6f
feat(#000057): benchmark matrix doc (for David) + GPU wattage harness
Two deliverables for the cost/energy axis of the constraint optimizer.

docs/benchmark-matrix.md — shareable spec of the control experiment:
the question, fixture (386 office-holder Qs with corpus-vintage gold),
the 3-model × 3-framing × 2-arm matrix (18 cells), the verdict
vocabulary + two reads (accuracy vs grounding-fidelity), the
deterministic code judge + its Opus calibration, the results-so-far
table, and the NEW cost dimension (tokens / latency / GPU watts /
joules-per-answer measured per GPU tier). Self-contained — readable
cold by David.

bench/watt_bench.py — GPU wattage harness. Samples nvidia-smi
power.draw on the inference GPU while driving a small representative
subset, reports mean/peak watts, trapezoid-integrated joules,
joules-per-question, and joules-per-token. Tags the GPU
(--gpu-label 3090|4090) so the optimizer can compare hardware tiers.
Idle-baseline sampling separates load draw from idle. Does NOT grade
(energy is independent of correctness); saves answers + per-question
timing to JSONL for a later quality-per-joule pass via
score_with_code_judge.

Designed to run ON the GPU box (the orchestrator has no GPU; the
3090/4090 live on the inference boxes). Degrades gracefully when
nvidia-smi is absent (energy fields null) so it is testable anywhere.
Verified: PowerSampler graceful degradation + trapezoid integration
(synthetic 100->200->200W over 2s = 350 J, exact).

The headline cost finding the optimizer must weight: qwen-think
reasoning = 1300-3300 tokens/answer vs qwen-nothink ~50-100 (20-50x),
for a workload where arborist+qwen-nothink already lands 82% CG. The
energy numbers will quantify whether reasoning's premium is ever
justified — grounding-fidelity per joule, not per answer.
2026-05-20 12:33:58 -04:00
42f614a501
docs(#000057): Addendum 8 — control sweep retrieval × model × framing × reasoning
Durable record of the #000057 sweep in the bench journal. Captures:

- The question: is Hermes-8B's confident present-day-officeholder
  fabrication an 8B weakness, a framing artefact, or does retrieval
  fix it? Crosses {hermes, qwen-nothink, qwen-think} × {plain,
  source_relative, as_of_corpus} × {solo, arborist} on a 386-item
  office-holder fixture with corpus-vintage gold.

- The judge methodology: Opus headless judge burned quota (79.5%
  JUDGE_ERROR), replaced with the deterministic code judge
  (bench/judge_code.py), calibrated against Opus's gradeable records
  (CG agreement 13->47%, WRONG 56->89%, ABSTAINED 80->95%).

- Consolidated CG% scorecard, all arms on the identical final judge.

- Three findings:
  1. Retrieval dominates — arb/qwen-nothink/plain 82% vs 7% solo;
     no solo config approaches the retrieval arms.
  2. Reasoning does NOT improve raw correctness — qwen-think/as_of
     44% vs nothink 50%.
  3. Reasoning's real cost is broken honest-abstention —
     qwen-nothink/source_relative abstains 97% (clean); qwen-think
     only 61%, reasoning itself into wrong parametric answers.

- Production recommendation: arborist + qwen-nothink, plain framing,
  reasoning OFF (82% CG, ~0% abstain, 11% wrong-assert).

- Held cell noted: arborist+qwen-think running at write time, result
  to be appended.

Bench %s are point-in-time measurements (not repo-derived counts),
so no AUTOCOUNT tags — consistent with addenda 1-7. test_doc_counts
3/3.
2026-05-20 06:52:42 -04:00
981ba84f4a
modified: docs/diagrams/arborist-modules.png
modified:   docs/diagrams/mesh-epoch-lifecycle.svg
	modified:   docs/diagrams/query-pipeline.png
2026-05-19 17:05:16 -04:00
a4f3e126f7
feat(#000049 §7 #28): tinygrad NLI backend + deterministic engine-agreement A/B; ONNX-immunity rationale
Opt-in third NLI inference backend (ARBORIST_NLI_BACKEND=tinygrad) in
qa/nli/shadow.py, parallel to torch/onnx-int8, behind the #000049
cage: shadow-only, never an audit_mode input, never auto-preempts the
proven path (guarded so it cannot regress torch/onnx). Loads the ONNX
export through tinygrad's frontend wrapped to the existing
model(**enc).logits contract so _nli_batch is byte-unchanged.

bench/scripts/nli_backend_ab.py + make bench-nli-backends: deterministic
A/B, gate is numerical agreement with the torch reference first,
latency second (a divergent engine = a different shadow signal = a
different nli_policy_hash). Instrument is honest — reports a requested
backend as unavailable rather than relabelling a fallback's numbers.

First CPU-smoke run already quantified that the deployed §7 #22 int8
export diverges Δmax≈0.42 from torch — the immunity property made
measurable, not a defect. Real tinygrad numbers pending a producer-box
run (tinygrad not an arborist dep; frontend op-coverage for the large
MNLI checkpoints unverified by design).

docs/onnx-vendor-capture-immunity.md: why the model-in-proof-path cage
makes the inference engine an interchangeable sidecar, never a trust
dependency — public-domain positioning capital. Indexed in CLAUDE.md.

Full suite 2498 passed (identical to baseline); 24/24 NLI tests green.
2026-05-19 12:34:04 -04:00
1356459091
feat(#000057): control experiment harness — Hermes-solo vs Arborist, blinded Opus judge (smoke-verified)
bench/control_ab.py + `make control-ab` (gated on judge-self-test
as a make dependency — instrument gate cannot be skipped). Same
model both arms; gold = target-article text by target_root; Arborist
[E…] scaffolding stripped (blinding — format can't betray the arm);
Arborist UNGROUNDED credited as honest abstention; hermetic Opus
judge; deterministic aggregate; self-auditing JSONL; threats-to-
validity printed in the report.

N=2 smoke: clean end-to-end, 0 JUDGE_ERROR — and already surfaced a
case AGAINST the treatment (solo correctly ABSTAINED; Arborist
HYBRID-WRONG). The instrument can falsify the Arborist value claim;
that is the point. n=2 proves nothing (report says so) — verdict
needs a real N.
2026-05-19 08:58:38 -04:00
65fd9fad5d
feat(#000057): hermetic external judge instrument — built + verified 4/4 (make judge-self-test)
fox ruled judge = Opus via `claude -p`. bench/judge.py:
hermetic (`env -u CLAUDECODE claude -p`, fresh process, context =
only (Q, answer, gold) — no arm label, no Arborist context, no
session), blinded-by-caller, reference-grounded against the fixed
gold (ignore parametric knowledge), structured via FINAL_VERDICT=
sentinel parsed LAST-match.

Instrument-before-experiment gate worked: first cut parsed
first-match over the model's chain-of-thought → 0/3 self-test. The
judge REASONED correctly; the parser was the defect (+ two bad test
fixtures, my error). Hardened (sentinel contract + fixed fixtures),
re-verified: `make judge-self-test` = 4/4 on known-verdict triples
via real claude -p. The make target is the precondition gate; no
control run trusts the judge until it passes.

Threat to validity recorded, not hidden: same model family judging;
mitigated (blind + no-stake + reference-grounded) not eliminated —
different-family SOTA cross-check is the only full removal.

Next: bench/control_ab.py + `make control-ab` (Hermes-solo vs
Arborist, gold=target-article text, blinded, judged) — NOT yet
built; no broken make target shipped for it.
2026-05-19 08:44:47 -04:00
fa81b97c5c
docs(#000057): judge reference = fixed independent gold, not either arm's retrieval (fox Q)
fox: should the judge get the same docs, or the 8 retrieved/cited?
Neither. Per-arm retrieved docs (a) are undefined for Hermes-solo
(no retrieval → breaks A/B symmetry), (b) re-import circularity
(judging the treatment vs its own retrieval), (c) measure citation
self-consistency (Arborist's verifier already does that), not
truth. Judge's reference = the mined question's fixed ground-truth
target/gold, identical for both arms, independent of retrieval —
the ground-truth-carrying fixture supplies exactly this. Recorded a
distinct, non-headline faithfulness ablation (judge Arborist vs its
own context) so it is never conflated with the control delta.
Index row unchanged (skim surface; ticket body is the design log).
2026-05-19 08:36:30 -04:00