arborist/docs
russell@unturf.com 3b301267ff
docs: #000037 §20+§17.1 refresh + #000025 Phase 1f closure + cookbook harvest section
Three coordinated doc landings tying together fox's evening
#000037 → #000025 closed-loop work (commits f625cac through
ff1752c + 8999b55):

== #000037 §20 Status — stale prose refresh ==

§20 said "open · awaiting go/no-go" but file header + TICKETS.md
both say "in progress" with phases 0/1/1.b/2 all landed. Refresh
§20 to reflect actual state with per-phase commit anchors:

- Phase 0 (doc): landed; David review applied per §21
- Phase 1 (pure-function controller): f625cac
  (arborist/substrate/prometheus.py + test_prometheus.py)
- Phase 1.b (gap-close): f9f5ae4 (§14 row 4 Hermes-saturation
  guard, §13 step 11 falsification-fixture proposal, §15 entropy
  + memory gates weight-tunable, ESCALATE > QUARANTINE > REJECT
  priority cascade)
- Phase 2 (advisory audit writes): a786d6d
  (prometheus_audit.py + controller_events sibling table; does
  NOT enter audit_events.event_hash preimage)
- §12 Trigger 2 fired 2026-05-10: divergence variance ratio
  0.575 > 0.5 with N=37 — Phase 1 opening is now empirically
  gate-satisfied per 8999b55
- Phase 3: deliberately NOT landed; replaced with read-only
  dry-run simulator surfacing five design findings (see §22)
- Closed-loop signal: 40 corpus-derived 5F fixtures harvested
  per ff1752c

== #000037 §17.1 — "78 atomic claim-pack records" → 92 ==

§17.1 said "#000031 Phase 2 has 78 atomic claim-pack records
that max out at ANCHOR-WARRANTED". #000031 closed at 92 records
(78 was an interim count during Phase 2). Refresh with the
journey (78 → 92) + AUTOCOUNT-tagged via db-where metric so
future drift fires immediately. Note the resolution context: all
92 now resolve via 74 citation-aliases + 13 term-aliases under
#000031 Phase 2.5 + B-1 + B-2. The unconscious sweep drains the
ANCHOR-WARRANTED → EVIDENCE-WARRANTED promotion backlog
(derivations.proof_blob rows still need computation even on
resolved chains).

== #000025 §11 Status — Phase 1f closure note ==

#000025 file header lists Phase 1a/1b.2/1c/1d/1e but the §11
Status section was frozen at "Open · awaiting go/no-go" — a
two-versions-old prose snapshot. Refresh with the per-phase
landing trail + add a Phase 1f section for the corpus-derived
falsification harvest that ff1752c shipped:

- Phase 1f closes the controller → 5F battery loop fox designed
  in #000037 §3 ("Divergence → candidate falsification fixture")
- bench/scripts/harvest_falsification_proposals.py reads qa.db,
  stratifies top-20-by-cache_key per audit_mode (HYBRID +
  UNGROUNDED), writes the 41-line JSONL pack (1 _meta + 40
  fixtures, AUTOCOUNT-tagged via fixture-rows)
- Every fixture row carries _harvest_meta with cache_key,
  witness_divergence at harvest time, audit_mode_at_harvest,
  harvest_threshold, source_ticket: "#000037 §13 step 11"
- 5F battery exercises them every test run;
  test_5f_falsification_harvested_pack_runs_clean asserts
  error_detection_rate == 1.0 by construction (every harvested
  row IS a falsification)
- Self-amplifying — coverage grows with corpus, not with
  hand-curation

Listed open items (§10.11 / 10.13 / 10.14) preserved verbatim
from file header so the index claim "still open" stays in sync.

== Cookbook: new "Adjacent: live-corpus → bench-fixture
   harvest" section ==

New section in warrant-substrate-cookbook.md between "Re-running
the substrate build" and "References" documenting the harvest
pattern. Three discipline patterns reused from the textbook
substrate noted explicitly:

1. Attribution metadata on every derived artifact (same shape as
   derivations.proof_blob carrying inclusion proofs back to
   source chunks)
2. Determinism via sort-and-cap (same shape as citation-alias
   cascade's "top 5 AND-join then top 3 OR-join" stratification)
3. Pin the metadata contract in tests (same shape as the
   cookbook appendix's discipline pins — silent regression
   becomes loud test failure)

Plus the reusable recipe for any controller emitting Proposal
records: define the dataclass, write a harvester filtering +
stratifying, pin metadata in tests, wire a make target.

References section gets four new entries pointing to #000037,
#000025, the harvest script, and the fixture pack.

== Drift caught + refreshed during this commit ==

While editing the cookbook, the AUTOCOUNT regression test
(from fc5ba50 / 6c6defb) caught two stale counts from fox's
in-flight prometheus work:

- test_prometheus.py: 36 → 42 (fox's uncommitted +6 for
  Phase 1.c sweep weight profile)
- test_prometheus_audit.py: 14 → 17 (fox's uncommitted +3)

Refreshed both inline + in the test/code-density table
(prometheus row test LOC also bumped 804 → 955 to match wc -l).

This is the harness firing exactly as designed — fox's
uncommitted tests changed live state and my doc claims went
stale within minutes. The test message named the file + line
+ claimed-vs-live, refresh was a 60-second turnaround.

== Verification ==

  $ pytest tests/test_doc_counts.py
  3 passed in 2.92s

  $ pytest tests/ -q
  2337 passed, 37 skipped in 107.43s

Hygiene: only docs/ paths staged. fox's in-flight changes to
arborist/qa/runner.py + arborist/substrate/prometheus.py +
tests/test_prometheus.py + tests/test_prometheus_audit.py
remain in their working tree, untouched by this commit.
2026-05-10 18:04:24 -04:00
..
_source #000012 Phase 1b: Merkle-AGI v8 consensus paper landed 2026-05-10 16:12:00 -04:00
diagrams docs/diagrams: rename aborist-modules → arborist-modules (post-rename cleanup) 2026-05-08 07:50:28 -04:00
tickets docs: #000037 §20+§17.1 refresh + #000025 Phase 1f closure + cookbook harvest section 2026-05-10 18:04:24 -04:00
bench-maxing.md aborist/arborist 2026-05-07 09:31:49 -04:00
benchmarks.md aborist/arborist 2026-05-07 09:31:49 -04:00
calculator-test-patterns.md docs/calculator-test-patterns: 3 new patterns from π* kernel work + 4 exemplar files 2026-05-10 16:33:19 -04:00
cti-architecture.md aborist/arborist 2026-05-07 09:31:49 -04:00
mesh.md aborist/arborist 2026-05-07 09:31:49 -04:00
pi-star-composition.md pi_star: land ticket #000015 (π* domain library + composition algebra) 2026-05-07 16:51:33 -04:00
qa-modes-bench.md aborist/arborist 2026-05-07 09:31:49 -04:00
seven-point-program.md tests/doc_counts: regression test for numeric claims in docs/ (4x drift fix) 2026-05-10 16:15:52 -04:00
soft-hash-channel-analysis.md tests/doc_counts: regression test for numeric claims in docs/ (4x drift fix) 2026-05-10 16:15:52 -04:00
soft-hash-channel-t3-bound.md soft-hash T3 bound: pre-review polish pass for external cryptographer 2026-05-10 15:59:16 -04:00
spec-methodology.md docs: land ticket #000019 (spec methodology for π*, V, policy fields) 2026-05-07 16:53:28 -04:00
TICKETS.md #000037 §12 Trigger 2 fires empirically — Phase 1 gate satisfied 2026-05-10 17:55:19 -04:00
tool-action-dag-design.md docs: add tool-action-dag-design.md research path (pre-ticket) 2026-05-07 19:47:50 -04:00
v7w-frontier-catalog.md #000013 closed: v7-W spatial-temporal substrate paper + namespace 2026-05-09 15:00:05 -04:00
v8-fork-score.md CLI: arborist v8 score → arborist substrate score 2026-05-10 09:12:34 -04:00
warrant-substrate-cookbook.md docs: #000037 §20+§17.1 refresh + #000025 Phase 1f closure + cookbook harvest section 2026-05-10 18:04:24 -04:00
zk-frontier-bench.md #000016 parked: ZK frontier-proof bench plan + wire protocol 2026-05-09 15:05:08 -04:00
zk-wire-protocol.md #000016 parked: ZK frontier-proof bench plan + wire protocol 2026-05-09 15:05:08 -04:00