chore: update dependencies with compatibility fixes

- Update all packages to latest versions via pnpm update --latest
- Downgrade Prisma 7 to 6 (v7 requires schema migration)
- Downgrade Tailwind CSS 4 to 3 (v4 requires PostCSS migration)
- Downgrade Storybook 10 to 8 (addons not available in v10)
- Pin cheerio to 1.0.0-rc.12 via pnpm override (type exports changed)
- Fix AI SDK tool definitions: parameters -> inputSchema
- Fix cheerio types in extract-meta and table-extract tools
- Add explicit type annotations to tool execute functions
- Migrate biome config to v2.3.11 schema

All type-checks, tests, and builds pass.

apps/web/package.json

@@ -15,13 +15,13 @@
     "generate-og": "tsx scripts/generate-og-images.ts"
   },
   "dependencies": {
-    "@ai-sdk/anthropic": "^3.0.2",
-    "@ai-sdk/google": "^3.0.2",
-    "@ai-sdk/groq": "^3.0.2",
-    "@ai-sdk/mistral": "^3.0.2",
-    "@ai-sdk/openai": "3.0.1",
-    "@modelcontextprotocol/sdk": "^1.25.1",
-    "@prisma/client": "^6.19.0",
+    "@ai-sdk/anthropic": "^3.0.9",
+    "@ai-sdk/google": "^3.0.6",
+    "@ai-sdk/groq": "^3.0.4",
+    "@ai-sdk/mistral": "^3.0.5",
+    "@ai-sdk/openai": "3.0.7",
+    "@modelcontextprotocol/sdk": "^1.25.2",
+    "@prisma/client": "^6.19.1",
     "@tpmjs/db": "workspace:*",
     "@tpmjs/env": "workspace:*",
     "@tpmjs/npm-client": "workspace:*",
@@ -34,42 +34,42 @@
     "@vercel/analytics": "^1.6.1",
     "@vercel/blob": "^2.0.0",
     "@vercel/kv": "^3.0.0",
-    "ai": "6.0.3",
+    "ai": "6.0.23",
     "better-auth": "^1.4.10",
     "bm25": "^0.1.1",
     "d3": "^7.9.0",
-    "next": "^16.0.8",
+    "next": "^16.1.1",
     "next-themes": "^0.4.6",
-    "openai": "^6.9.1",
-    "prisma": "^6.19.0",
-    "react": "^19.0.0",
-    "react-dom": "^19.0.0",
+    "openai": "^6.15.0",
+    "prisma": "^6.19.1",
+    "react": "^19.2.3",
+    "react-dom": "^19.2.3",
     "react-markdown": "^10.1.0",
     "react-syntax-highlighter": "^16.1.0",
     "react-virtuoso": "^4.18.1",
     "rehype-raw": "^7.0.0",
     "rehype-sanitize": "^6.0.0",
     "remark-gfm": "^4.0.1",
-    "resend": "^6.6.0",
+    "resend": "^6.7.0",
     "sonner": "^2.0.7",
-    "zod": "^4.0.0"
+    "zod": "^4.3.5"
   },
   "devDependencies": {
     "@tailwindcss/typography": "^0.5.19",
     "@tpmjs/eslint-config": "workspace:*",
     "@tpmjs/tailwind-config": "workspace:*",
     "@tpmjs/tsconfig": "workspace:*",
-    "@types/node": "^22.10.2",
-    "@types/react": "^19.0.2",
-    "@types/react-dom": "^19.0.2",
-    "autoprefixer": "^10.4.20",
+    "@types/node": "^25.0.3",
+    "@types/react": "^19.2.7",
+    "@types/react-dom": "^19.2.3",
+    "autoprefixer": "^10.4.23",
     "dotenv": "^17.2.3",
-    "eslint": "^9.39.1",
-    "eslint-config-next": "^16.0.4",
-    "postcss": "^8.5.1",
-    "tailwindcss": "^3.4.17",
+    "eslint": "^9.39.2",
+    "eslint-config-next": "^16.1.1",
+    "postcss": "^8.5.6",
+    "tailwindcss": "^3.4.19",
     "tsx": "^4.21.0",
     "typescript": "^5.9.3",
-    "vitest": "^2.1.9"
+    "vitest": "^4.0.16"
   }
 }