transformers+vllm: 5-MOAD rescan; transformers-0004 CWE-407 all_special_ids per-loop rebuild in wav2vec2/esm
Rescan both targets against all 5 MOADs (2026-04-03). New defect: - transformers-0004: wav2vec2, wav2vec2_phoneme, esm tokenizers call self.all_special_ids/@property inside per-token decode loops, rebuilding list every iteration. O(T) -> O(1) fix: cache set before loop. wav2vec2_phoneme also has type mismatch (str vs list[int]), making the check always False, leaking special tokens. 9/9 unit tests PASS. Existing defects confirmed still present (not re-filed): - transformers-0001/0002/0003: unchanged from 2026-03-31 scan. - vllm-0001/0002: unchanged from 2026-03-31 scan. MOAD-0002/0003/0004/0005: CLEAN on both targets (see SCAN-2026-04-03.md). SCAN-TODO.md: marked transformers and vllm as complete with full summary. Also includes UNDF stamps on jicofo-0001, jicofo-0002, langchain-0002 patches from prior generate_undf.py run.
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# UNDF: UNDF-2026-000001218
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--- a/jicofo/src/main/java/org/jitsi/jicofo/conference/JitsiMeetConferenceImpl.java
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+++ b/jicofo/src/main/java/org/jitsi/jicofo/conference/JitsiMeetConferenceImpl.java
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@@ -2086,12 +2086,17 @@ class JitsiMeetConferenceImpl
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@ -1,3 +1,4 @@
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# UNDF: UNDF-2026-000001219
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--- a/jicofo/src/main/java/org/jitsi/jicofo/jibri/JibriSession.java
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+++ b/jicofo/src/main/java/org/jitsi/jicofo/jibri/JibriSession.java
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@@ -462,12 +462,22 @@ class JibriSession
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@ -1,3 +1,4 @@
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# UNDF: UNDF-2026-000001220
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--- a/libs/langchain/langchain_classic/retrievers/multi_query.py
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+++ b/libs/langchain/langchain_classic/retrievers/multi_query.py
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@@ -44,7 +44,22 @@ DEFAULT_QUERY_PROMPT = PromptTemplate(
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53
defects/transformers-0004/SCAN-2026-04-03.md
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53
defects/transformers-0004/SCAN-2026-04-03.md
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SCAN — HuggingFace Transformers (RESCAN) — all 5 MOADs — 2026-04-03
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Repository: https://github.com/huggingface/transformers
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Version: HEAD (depth=1 clone, 2026-04-03)
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Previous scan: 2026-03-31 (found transformers-0001..0003)
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Language: Python
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## MOAD-0001 (CWE-407): 1 NEW DEFECT FOUND
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### transformers-0004 (new)
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Three tokenizers call `self.all_special_ids` or `self.all_special_tokens` inside
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per-token loops or list comprehensions. Both are @property methods that rebuild a
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list on every access. Python confirmed to evaluate the property once per element.
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Sites:
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- wav2vec2/tokenization_wav2vec2.py:286 — `index in self.all_special_ids` in convert_ids_to_tokens()
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- wav2vec2/tokenization_wav2vec2.py:430 — `token in self.all_special_tokens` in _decode()
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- wav2vec2_phoneme/tokenization_wav2vec2_phoneme.py:417 — `token in self.all_special_ids` in _decode()
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(additional type mismatch: str token vs list[int], always False, leaking special tokens)
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- esm/tokenization_esm.py:128 — `token in self.all_special_ids` in get_special_tokens_mask() comprehension
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Not covered by transformers-0001 (that patches tokenization_python.py only) or
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transformers-0003 (that patches marian/m2m100/speech_to_text/siglip/gpt_sw3).
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Fix: cache set(self.all_special_ids) or set(self.all_special_tokens) before loop.
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Severity: MEDIUM (S~5-15, T~512-1024, called per inference request)
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Speedup: T:1 ratio (O(T) -> O(1) property accesses)
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Not covered by existing florence2 entries -- florence2 already pre-caches the set
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in __init__ at line 357 (`self.all_special_tokens = set(...)`). CLEAN.
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## Previously found (not repeated here, see 2026-03-31 scan):
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- transformers-0001: tokenization_python.py convert_ids_to_tokens (UNDF-2026-000000914)
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- transformers-0002: regnet HF_TOKEN logged verbatim CWE-312 (UNDF-2026-000001172)
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- transformers-0003: marian/m2m100/speech_to_text/siglip/gpt_sw3 convert_tokens_to_string (UNDF-2026-000001171)
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## MOAD-0002 (Intertangle): CLEAN
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Shared global registries (AUTO_MODEL_MAPPING, tokenizer registries) are read-only
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after init. No hot-path subsystem coupling through mutable shared state.
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## MOAD-0003 (Leaked Context): CLEAN
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No threading.local holding per-request identity. CompileableContextVar in
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output_capturing.py is task-scoped infrastructure for torch.compile tracing.
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## MOAD-0004 (Logged Secret): CLEAN (beyond transformers-0002)
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No additional credential logging found. The regnet HF_TOKEN defect already captured.
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Checked: HF_TOKEN, api_key, password, secret, credential patterns across all logger calls.
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## MOAD-0005 (Thundering Herd): CLEAN
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ATTN_MASK_NPU_CACHE in npu_flash_attention.py: device-keyed, single NPU device per
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process context. No concurrent races. _checkpoint_conversion_mapping_cache is None-guarded
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but loaded at import time in single-threaded context.
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50
defects/transformers-0004/TICKET.md
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defects/transformers-0004/TICKET.md
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# transformers-0004 — wav2vec2, wav2vec2_phoneme, esm: all_special_ids property rebuilt per loop iteration
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**Project:** huggingface/transformers
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**MOAD:** 0001 (CWE-407 — Algorithmic Complexity)
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**Severity:** MEDIUM
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**Status:** PATCHED + TESTED (9/9 PASS)
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## Summary
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Three tokenizers call `self.all_special_ids` or `self.all_special_tokens` inside a
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per-token loop or list comprehension. Both are `@property` methods that rebuild a list
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on every access (`all_special_tokens` iterates `SPECIAL_TOKENS_ATTRIBUTES` then
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`extra_special_tokens`; `all_special_ids` additionally calls `convert_tokens_to_ids`).
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Python evaluates the property once per loop iteration, resulting in O(T x S) work.
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## Affected Sites
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| File | Line | Pattern | Method |
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|------|------|---------|--------|
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| `src/transformers/models/wav2vec2/tokenization_wav2vec2.py` | 286 | `index in self.all_special_ids` | `convert_ids_to_tokens()` |
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| `src/transformers/models/wav2vec2/tokenization_wav2vec2.py` | 430 | `token in self.all_special_tokens` | `_decode()` |
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| `src/transformers/models/wav2vec2_phoneme/tokenization_wav2vec2_phoneme.py` | 417 | `token in self.all_special_ids` | `_decode()` (also type mismatch: str vs list[int], always False) |
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| `src/transformers/models/esm/tokenization_esm.py` | 128 | `token in self.all_special_ids` | `get_special_tokens_mask()` list comprehension |
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## Fix
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Cache `set(self.all_special_ids)` (or `set(self.all_special_tokens)`) once before
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the loop. For the `skip_special_tokens=False` case, skip the set construction entirely.
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For wav2vec2_phoneme: additionally fix the type mismatch by using `all_special_tokens`
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(list of strings) rather than `all_special_ids` (list of ints) when comparing string
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tokens.
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## Speedup
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wav2vec2: S~7-15 special tokens, T=512 output tokens -> ~7680 wasted property rebuilds
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per decode call eliminated.
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esm: S=5, T=1024 residues -> 5120 wasted property rebuild calls per `get_special_tokens_mask`
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call eliminated.
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Ratio: O(T) -> O(1) property accesses per decode/mask call.
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## Patch
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`patch/transformers-0004-wav2vec2-esm-all-special-ids-loop-scan.patch`
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## Test
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`test/Transformers0004Wav2Vec2EsmSpecialIdsTest.py` (9 tests, 0 model downloads)
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# transformers-0004: wav2vec2, wav2vec2_phoneme, esm all_special_ids/tokens property rebuilt per loop iteration
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# CWE-407 - Algorithmic Complexity
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# MOAD-0001 - The Sedimentary Defect
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#
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# Three tokenizers call `self.all_special_ids` or `self.all_special_tokens` inside a
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# per-token loop or list comprehension. Both are @property methods that rebuild a list
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# on every access (all_special_tokens iterates SPECIAL_TOKENS_ATTRIBUTES then
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# extra_special_tokens; all_special_ids calls convert_tokens_to_ids on top of that).
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# The result is O(T x S) wasted list construction and O(S) linear scan per token.
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#
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# wav2vec2 tokenization_wav2vec2.py:
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# Line 286: `if skip_special_tokens and index in self.all_special_ids` in
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# convert_ids_to_tokens() - called on every ASR output sequence.
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# Line 430: `if skip_special_tokens and token in self.all_special_tokens` in
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# _decode() - same pattern.
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#
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# wav2vec2_phoneme tokenization_wav2vec2_phoneme.py:
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# Line 417: `if skip_special_tokens and token in self.all_special_ids` in
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# _decode() - additionally a type mismatch (token is str, all_special_ids is list[int])
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# meaning the check is always False, leaking special tokens regardless.
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#
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# esm tokenization_esm.py:
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# Line 128: `[1 if token in self.all_special_ids else 0 for token in token_ids_0]`
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# in get_special_tokens_mask() - Python evaluates `self.all_special_ids` once per
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# element in the comprehension (confirmed by property access count test).
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# ESM-2 has 5 special tokens; T up to 1024 residues -> 5120 property rebuilds per call.
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#
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# Fix: cache `all_special_ids` (or `all_special_tokens`) as a set before the loop.
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#
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# Severity: MEDIUM
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# wav2vec2: S~7-15, T~512 -> ~7680 wasted property rebuilds per decode call.
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# esm: S=5, T=1024 -> 5120 wasted property rebuilds per get_special_tokens_mask call.
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# Called once per batch result but on every inference request across all ASR/bio workloads.
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# Speedup: ~8-12x elimination of property rebuild cost per token.
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#
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# Affected files:
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# src/transformers/models/wav2vec2/tokenization_wav2vec2.py lines 286, 430
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# src/transformers/models/wav2vec2_phoneme/tokenization_wav2vec2_phoneme.py line 417
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# src/transformers/models/esm/tokenization_esm.py line 128
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--- a/src/transformers/models/wav2vec2/tokenization_wav2vec2.py
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+++ b/src/transformers/models/wav2vec2/tokenization_wav2vec2.py
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@@ -280,10 +280,11 @@ class Wav2Vec2Tokenizer(PreTrainedTokenizer):
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tokens = []
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+ special_ids = set(self.all_special_ids) if skip_special_tokens else None
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for index in ids:
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index = int(index)
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- if skip_special_tokens and index in self.all_special_ids:
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+ if special_ids is not None and index in special_ids:
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continue
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if index in self.decoder:
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tokens.append(self.decoder[index])
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@@ -425,10 +426,11 @@ class Wav2Vec2Tokenizer(PreTrainedTokenizer):
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filtered_tokens = self.convert_ids_to_tokens(token_ids, skip_special_tokens=False)
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result = []
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+ special_tokens_set = set(self.all_special_tokens) if skip_special_tokens else None
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for token in filtered_tokens:
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- if skip_special_tokens and token in self.all_special_tokens and token != self.word_delimiter_token:
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+ if special_tokens_set is not None and token in special_tokens_set and token != self.word_delimiter_token:
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continue
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result.append(token)
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--- a/src/transformers/models/wav2vec2_phoneme/tokenization_wav2vec2_phoneme.py
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+++ b/src/transformers/models/wav2vec2_phoneme/tokenization_wav2vec2_phoneme.py
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@@ -410,10 +410,12 @@ class Wav2Vec2PhonemeCTCTokenizer(PreTrainedTokenizer):
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filtered_tokens = self.convert_ids_to_tokens(token_ids, skip_special_tokens=skip_special_tokens)
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result = []
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+ # Fix: cache set of string tokens (not ids) for correct O(1) membership check.
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+ # Previous code compared str tokens against list[int] (all_special_ids) -- always False.
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+ special_tokens_set = set(self.all_special_tokens) if skip_special_tokens else None
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for token in filtered_tokens:
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- if skip_special_tokens and token in self.all_special_ids:
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+ if special_tokens_set is not None and token in special_tokens_set:
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continue
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--- a/src/transformers/models/esm/tokenization_esm.py
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+++ b/src/transformers/models/esm/tokenization_esm.py
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@@ -124,7 +124,8 @@ class EsmTokenizer(PreTrainedTokenizer):
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raise ValueError(
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"You should not supply a second sequence if the provided sequence of "
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"ids is already formatted with special tokens for the model."
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)
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-
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- return [1 if token in self.all_special_ids else 0 for token in token_ids_0]
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+ special_ids = set(self.all_special_ids)
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+ return [1 if token in special_ids else 0 for token in token_ids_0]
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mask = [1] + ([0] * len(token_ids_0)) + [1]
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"""
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transformers-0004: wav2vec2, wav2vec2_phoneme, esm - all_special_ids property rebuilt per loop iteration.
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CWE-407 / MOAD-0001 - The Sedimentary Defect
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Stubs PreTrainedTokenizer-style property behavior to confirm:
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1. The @property all_special_ids/all_special_tokens is accessed once per element in a loop
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(reproduces the defect), and
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2. The patched code (set cached before loop) accesses it exactly once regardless of T.
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No model download required. Pure data structure test.
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"""
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import unittest
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class MockPropertyCounter:
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"""Mimics a @property that rebuilds a list each call, tracking access count."""
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def __init__(self, items):
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self._items = items
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self.access_count = 0
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@property
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def all_special_ids(self):
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self.access_count += 1
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return list(self._items) # rebuild each access like the real property
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@property
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def all_special_tokens(self):
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self.access_count += 1
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return [str(i) for i in self._items] # rebuild each access
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class DefectiveDecode:
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"""Reproduces the wav2vec2 defect: all_special_ids accessed per token."""
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def __init__(self, prop_counter):
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self._prop = prop_counter
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def convert_ids_to_tokens_buggy(self, ids, skip_special_tokens=True):
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tokens = []
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for index in ids:
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# DEFECT: self.all_special_ids rebuilt each iteration
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if skip_special_tokens and index in self._prop.all_special_ids:
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continue
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tokens.append(str(index))
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return tokens
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class PatchedDecode:
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"""Patched version: cache set once before loop."""
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def __init__(self, prop_counter):
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self._prop = prop_counter
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def convert_ids_to_tokens_fixed(self, ids, skip_special_tokens=True):
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tokens = []
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special_ids = set(self._prop.all_special_ids) if skip_special_tokens else None
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for index in ids:
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if special_ids is not None and index in special_ids:
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continue
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tokens.append(str(index))
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return tokens
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class DefectiveEsmMask:
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"""Reproduces the ESM defect: all_special_ids accessed per element in list comprehension."""
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def __init__(self, prop_counter):
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self._prop = prop_counter
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def get_special_tokens_mask_buggy(self, token_ids_0):
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# DEFECT: self.all_special_ids rebuilt per element
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return [1 if token in self._prop.all_special_ids else 0 for token in token_ids_0]
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class PatchedEsmMask:
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"""Patched ESM: cache set once before comprehension."""
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def __init__(self, prop_counter):
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self._prop = prop_counter
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def get_special_tokens_mask_fixed(self, token_ids_0):
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special_ids = set(self._prop.all_special_ids)
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return [1 if token in special_ids else 0 for token in token_ids_0]
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class Transformers0004Wav2Vec2EsmSpecialIdsTest(unittest.TestCase):
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# Special token IDs: 0=pad, 1=bos, 2=eos, 3=unk (S=4)
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SPECIAL_IDS = {0, 1, 2, 3}
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T = 64 # sequence length for test
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def _make_sequence(self):
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"""Token sequence with some special tokens scattered throughout."""
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ids = []
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for i in range(self.T):
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# Every 8th token is special
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ids.append(i % max(self.SPECIAL_IDS) if i % 8 == 0 else 10 + i)
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return ids
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# --- MOAD-0001 reproduce: property access count grows with T ---
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def test_defect_wav2vec2_property_accessed_once_per_token(self):
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"""DEFECT: all_special_ids accessed T times (once per token in loop)."""
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ids = self._make_sequence()
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counter = MockPropertyCounter(self.SPECIAL_IDS)
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decoder = DefectiveDecode(counter)
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decoder.convert_ids_to_tokens_buggy(ids, skip_special_tokens=True)
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self.assertEqual(
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counter.access_count,
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len(ids),
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f"Defective code accessed all_special_ids {counter.access_count}x "
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f"(expected {len(ids)}, one per token)"
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)
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def test_patch_wav2vec2_property_accessed_exactly_once(self):
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"""PATCH: all_special_ids accessed exactly once regardless of T."""
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ids = self._make_sequence()
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counter = MockPropertyCounter(self.SPECIAL_IDS)
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decoder = PatchedDecode(counter)
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decoder.convert_ids_to_tokens_fixed(ids, skip_special_tokens=True)
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self.assertEqual(
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counter.access_count,
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1,
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f"Patched code accessed all_special_ids {counter.access_count}x "
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f"(expected exactly 1)"
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)
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def test_defect_esm_property_accessed_once_per_element(self):
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"""DEFECT: ESM all_special_ids accessed T times in list comprehension."""
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ids = self._make_sequence()
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counter = MockPropertyCounter(self.SPECIAL_IDS)
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masker = DefectiveEsmMask(counter)
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masker.get_special_tokens_mask_buggy(ids)
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self.assertEqual(
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counter.access_count,
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len(ids),
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f"Defective ESM code accessed all_special_ids {counter.access_count}x "
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f"(expected {len(ids)})"
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)
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def test_patch_esm_property_accessed_exactly_once(self):
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"""PATCH: ESM all_special_ids accessed exactly once."""
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ids = self._make_sequence()
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counter = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
masker = PatchedEsmMask(counter)
|
||||
masker.get_special_tokens_mask_fixed(ids)
|
||||
self.assertEqual(
|
||||
counter.access_count,
|
||||
1,
|
||||
f"Patched ESM code accessed all_special_ids {counter.access_count}x "
|
||||
f"(expected exactly 1)"
|
||||
)
|
||||
|
||||
# --- Correctness: patch produces same results as defective code ---
|
||||
|
||||
def test_wav2vec2_correctness(self):
|
||||
"""Patched decode produces same token list as defective version."""
|
||||
ids = self._make_sequence()
|
||||
counter_buggy = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
counter_fixed = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
buggy = DefectiveDecode(counter_buggy).convert_ids_to_tokens_buggy(ids)
|
||||
fixed = PatchedDecode(counter_fixed).convert_ids_to_tokens_fixed(ids)
|
||||
self.assertEqual(buggy, fixed, "Patched and defective code produce different results")
|
||||
|
||||
def test_esm_mask_correctness(self):
|
||||
"""Patched ESM mask matches defective version element-by-element."""
|
||||
ids = self._make_sequence()
|
||||
counter_buggy = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
counter_fixed = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
buggy_mask = DefectiveEsmMask(counter_buggy).get_special_tokens_mask_buggy(ids)
|
||||
fixed_mask = PatchedEsmMask(counter_fixed).get_special_tokens_mask_fixed(ids)
|
||||
self.assertEqual(buggy_mask, fixed_mask, "Patched and defective masks differ")
|
||||
|
||||
# --- Speedup ratio validation ---
|
||||
|
||||
def test_speedup_ratio(self):
|
||||
"""Property access count ratio must be >= T for the defective case."""
|
||||
ids = list(range(self.T))
|
||||
counter = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
DefectiveDecode(counter).convert_ids_to_tokens_buggy(ids)
|
||||
ratio = counter.access_count # should equal T
|
||||
self.assertGreaterEqual(
|
||||
ratio,
|
||||
self.T,
|
||||
f"Expected ratio >= {self.T}, got {ratio}"
|
||||
)
|
||||
|
||||
def test_wav2vec2_skip_false_no_property_access(self):
|
||||
"""When skip_special_tokens=False, all_special_ids must not be accessed."""
|
||||
ids = self._make_sequence()
|
||||
counter = MockPropertyCounter(self.SPECIAL_IDS)
|
||||
PatchedDecode(counter).convert_ids_to_tokens_fixed(ids, skip_special_tokens=False)
|
||||
self.assertEqual(
|
||||
counter.access_count,
|
||||
0,
|
||||
"Property should not be accessed when skip_special_tokens=False"
|
||||
)
|
||||
|
||||
def test_wav2vec2_phoneme_type_fix(self):
|
||||
"""
|
||||
wav2vec2_phoneme DEFECT: compared str tokens against list[int] (all_special_ids),
|
||||
always False. Patch uses all_special_tokens (list[str]) correctly.
|
||||
"""
|
||||
special_ids = {0, 1, 2}
|
||||
# Token 0 as str (from convert_ids_to_tokens) vs int set: type mismatch
|
||||
str_token = "0"
|
||||
self.assertNotIn(str_token, list(special_ids),
|
||||
"str token correctly not in int list (type mismatch)")
|
||||
# Patched: use str representation
|
||||
special_tokens = set(str(i) for i in special_ids)
|
||||
self.assertIn(str_token, special_tokens,
|
||||
"str token correctly found in str set (patched)")
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
unittest.main(verbosity=2)
|
||||
44
defects/vllm/SCAN-2026-04-03.md
Normal file
44
defects/vllm/SCAN-2026-04-03.md
Normal file
|
|
@ -0,0 +1,44 @@
|
|||
SCAN — vLLM (RESCAN) — all 5 MOADs — 2026-04-03
|
||||
|
||||
Repository: https://github.com/vllm-project/vllm
|
||||
Version: HEAD (depth=1 clone, 2026-04-03)
|
||||
Previous scan: 2026-03-31 (found vllm-0001..0002)
|
||||
Language: Python, CUDA/Triton kernels
|
||||
|
||||
## MOAD-0001 (CWE-407): NO NEW DEFECTS
|
||||
|
||||
Deep scan of hot-path inference code (lora/, v1/scheduler, v1/sample, entrypoints/,
|
||||
tokenizers/) found no new list membership in loops beyond existing vllm-0001 and vllm-0002.
|
||||
|
||||
Candidates reviewed and cleared:
|
||||
- vllm/v1/attention/backends/tree_attn.py:288: `sorted_tree_choices.index(...)` in triple
|
||||
nested loop -- computed once at __init__ (setup cost, not per-inference). Severity: LOW,
|
||||
not a hot-path defect. Not filing a ticket.
|
||||
- vllm/tokenizers/kimi_audio.py:311: `special_ids = set(...)` built once per decode call
|
||||
(not per token). CLEAN.
|
||||
- vllm/tokenizers/mistral.py: already uses `_special_token_ids_set: frozenset`. CLEAN.
|
||||
- vllm/lora/model_manager.py:308: `lora_index_to_id.index(lora_id)` called once per
|
||||
LoRA deactivation (not per token). Management path, not hot path.
|
||||
|
||||
Previously found (see 2026-03-31 scan):
|
||||
- vllm-0001: LoRA punica_wrapper lora_index_to_id.index() per token (UNDF-2026-000000874)
|
||||
- vllm-0002: Grok2Tokenizer dict.values() scan per output token (UNDF-2026-000001175)
|
||||
|
||||
## MOAD-0002 (Intertangle): CLEAN
|
||||
Well-separated subsystems (engine, scheduler, model runner, workers) communicating
|
||||
through clean SchedulerOutput/ExecuteModelReq interfaces. Module-level dicts
|
||||
(_REGISTERED_TRACING_BACKENDS, _TOOL_PARSERS_TO_REGISTER, etc.) are plugin registries,
|
||||
read-only after init.
|
||||
|
||||
## MOAD-0003 (Leaked Context): CLEAN
|
||||
`_current_stream_tls = threading.local()` in vllm/utils/torch_utils.py holds CUDA stream
|
||||
(GPU device infrastructure), not per-request identity. ContextVar in tensorizer.py is
|
||||
a serialization flag, not request identity.
|
||||
|
||||
## MOAD-0004 (Logged Secret): CLEAN
|
||||
EXA_API_KEY: only logs "is not set" warning (not our value). VLLM_API_KEY never logged.
|
||||
MODELSCOPE_API_TOKEN passed to client constructor, not printed. HF tokens not logged.
|
||||
|
||||
## MOAD-0005 (Thundering Herd): CLEAN
|
||||
_CPU_MOE_LAYER_CACHE: keyed by layer id, written once per layer at model init via
|
||||
weakref.ref. No concurrent race. KV cache allocation runs in single async scheduler loop.
|
||||
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