whitepaper: 312 sites / 151 ecosystems — wave2+3 defect tables and PDF rebuild

Add 88 new defect entries to HIGH and MEDIUM tables:
  HIGH: mysql-0001/0002, mariadb-0001, redis-0001/0002, valkey-0001/0002, openvpn-0001,
        vlc-0001, prometheus-0001, otel-collector-0001, cockroachdb-0001..0004,
        tidb-0001..0008, kubernetes-0001/0002, go-0001, kotlin-0002, scala-0001,
        allegro5-0001, sdl2-0001, grafana-0001, clickhouse-0001, duckdb-0001,
        mongodb-0001, envoy-0001, istio-0001, cilium-0001, linkerd2-0001,
        linux-0001/0002/0003, tor-0002/0003, curl-0001, julia-0001, lua-0001,
        perl5-0001, nats-0001, spring-0003/0004, tomcat-0001, onos-0002, odl-0002

  MEDIUM: helm-0001, mariadb-0002, openssl-0001/0002, memcached-0001,
          cassandra-0001..0004, flink-0001, storm-0001/0002, zookeeper-0001..0003,
          pip-0001, gradle-0001, nginx-0001, haproxy-0001, caddy-0001, varnish-0001,
          ffmpeg-0001, gstreamer-0001, raylib-0001, love2d-0001, php-0001/0002,
          r-source-0001, cpython-0002, ruby-0001, rabbitmq-0003/0004, activemq-0001,
          ovs-0001, onos-0003, odl-0002, jetty-0001

PDF: 976K

defects/cpython/patch/0001-pkgutil-extend-path-set-dedup.patch

@@ -0,0 +1,21 @@
+diff --git a/Lib/pkgutil.py b/Lib/pkgutil.py
+--- a/Lib/pkgutil.py
++++ b/Lib/pkgutil.py
+@@ -301,6 +301,7 @@ def extend_path(path, name):
+
+     path = path[:] # Start with a copy of the existing path
++    path_set = set(path)  # O(1) membership — avoids O(n²) in the loop below
+
+     parent_package, _, final_name = name.rpartition('.')
+     if parent_package:
+@@ -320,9 +321,10 @@ def extend_path(path, name):
+             for portion in portions:
+                 # XXX This may still add duplicate entries to path on
+                 # case-insensitive filesystems
+-                if portion not in path:
++                if portion not in path_set:
+                     path.append(portion)
++                    path_set.add(portion)
+
+         # XXX Is this the right thing for subpackages like zope.app?
+         # It looks for a file named "zope.app.pkg"