arborist/docs/_source
russell@unturf.com aad24d3cfe
docs: clear all 39 cold-build Sphinx warnings (truly green)
A `make docs-api-clean && make docs-api` cold rebuild now succeeds
with zero WARNING/ERROR lines (was 39).

Docstring fixes (RST hygiene — no semantic change):
- arborist/qa/{keys,runner,query,verify,quantifier,metacognition,dag,
  evidence}.py — add blank lines around indented blocks, convert
  ad-hoc indented sections to literal blocks (`::`), avoid line-broken
  inline literals (e.g. UNKNOWN_EVIDENCE_ID), and replace nested
  bracket/quote literals with cleaner wording.
- arborist/concepts/__init__.py — wrap function-signature listing in
  a literal block so bare `*` (kwarg marker) doesn't trip docutils.
- arborist/store.py — blank line before bullet lists in module +
  connect docstrings.
- arborist/evict.py — replace ad-hoc `{ ... }` enum block with prose.

Surface fixes:
- docs/_source/_ext/makefile_targets.py — escape `*` in auto-
  generated Makefile target descriptions (covers `*-parallel`,
  `*.dot`, `*.db`, `π*`, etc.) so the generator emits clean RST.
- docs/_source/index.rst, concepts.rst — extend title underlines
  to match title length.
- docs/_source/concepts.rst, v8-fork-score.rst — widen first column
  of grid tables so cells no longer overflow into the column margin.
- docs/_source/merkle-agi-v7w-spatial-temporal.rst — switch
  pseudocode JSON block from `code-block:: json` to `text` (the
  `<int32 x 3>` placeholders aren't valid JSON tokens).

Verification:
- make docs-api-clean && make docs-api → build succeeded, 0 warnings
- make test → 1588 passed, 28 skipped
- make chain-check-shards → 0 breaks across all 7 shards
- import-time SyntaxWarning escalation on edited modules → clean
2026-05-09 18:00:15 -04:00
..
_ext docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
_static docs: add Read the Docs configuration 2026-05-04 08:17:24 -04:00
api docs: open ticket #000022 (adapter LossReport) + federation doc-discoverability fix 2026-05-07 16:36:13 -04:00
bench.rst fan-out: witness audit + 5F extractor + function-sampled demo + docs 2026-05-09 13:19:30 -04:00
concepts.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
conf.py docs: footer attribution → russell@unturf./foxhop/TimeHexOn/legallydav1dpro unturf permacomputers 2026 2026-05-07 14:53:33 -04:00
cookbook.rst aborist/arborist 2026-05-07 09:31:49 -04:00
diagrams trim Makefile (-6 redundant targets) + better RTD docs 2026-05-04 09:03:03 -04:00
index.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
license.rst aborist/arborist 2026-05-07 09:31:49 -04:00
Makefile docs: add Sphinx API reference generation from docstrings 2026-05-04 07:55:34 -04:00
merkle-agi-v7w-spatial-temporal.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
pi-star.rst docs: propagate kernel/sub-battery counts to canonical surfaces 2026-05-09 17:27:02 -04:00
quickstart.rst aborist/arborist 2026-05-07 09:31:49 -04:00
README.md aborist/arborist 2026-05-07 09:31:49 -04:00
requirements.txt docs: switch to sphinx-book-theme for unified right-side project TOC 2026-05-04 09:13:14 -04:00
v8-fork-score.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00

Arborist API Reference (Sphinx)

This directory contains Sphinx configuration to generate API documentation from docstrings.

Build

cd docs/_source
make html           # Generate HTML (output: _build/html/)
make text           # Generate text (output: _build/text/)
make clean          # Remove build artifacts

Or directly:

sphinx-build -b html . _build/html

View

After building, open _build/html/index.html in a browser.

Structure

  • conf.py — Sphinx configuration
  • index.rst — Main table of contents
  • api/ — Module documentation (one .rst per module category)
    • substrate.rst — Core data structures (merkle, document, wikitext)
    • storage.rst — SQLite schema (store, ingest, evict)
    • retrieval.rst — FTS5 search (search, sources, concepts)
    • qa.rst — Q&A pipeline (runner, query, verify, evidence, etc.)
    • distill.rst — Distillation (surface→core)
    • mesh.rst — Federation (gossip-based sync)
    • cli.rst — Command-line interface

What it replaces

This generated documentation replaces docs/modules.md (1200+ lines of static API reference). The docstrings in code are the source of truth; Sphinx extracts them automatically.

Adding new modules

  1. Add a docstring to the module (module-level docstring at the top of module.py)
  2. Add an .rst file in api/ that includes the module with automodule directive
  3. Reference it in index.rst
  4. Rebuild with make html

Theme

Uses furo theme (modern, responsive, search-enabled).

Autodoc directives

The .rst files use Sphinx automodule to extract:

  • Module docstrings
  • Class docstrings + members
  • Function signatures + docstrings
  • Source code links (:viewcode: extension)

See Sphinx autodoc docs.