arborist/aborist/cli.py
russell@unturf.com a056acfb5b
prepare full Wikipedia 2003-05-16 ingest: cur + old (revisions)
The 2003-05-16 archive ships three files:
  20030516_cur_tablesql.bz2   82 MB  current snapshot (single revision/page)
  old_tablesqlbz2.1          640 MiB \
  old_tablesqlbz2.2          252 MiB / split halves of old (full revision
                                       history). Concatenate before bzcat.

Generalize the parser:
  WikipediaSqlDump(table='cur'|'old')  — shared statement parser, single
                                         column-position contract for the
                                         first 4 fields (id/ns/title/text)
  WikipediaCurDump  — back-compat wrapper, table='cur'
  WikipediaOldDump  — new, table='old'; old has no is_redirect, every
                      revision is real

Old rows surface old_id and old_timestamp via Document.extra so a
downstream pass can sort revisions chronologically before re-ingesting
through the supersedes-edge path.

Makefile gains:
  fetch-cur / fetch-old / fetch (both)
  ingest-cur / ingest-old / ingest (cur default)
  WP_OLD target concatenates the two split parts
CLI ingest --source now accepts wikipedia_cur or wikipedia_old.

Smoke (real dump): 5 revisions of "AtlasShrugged/Companies" yielded
correctly with old_id=2..10, timestamps from January 2002.
2026-04-27 08:10:42 -04:00

449 lines
14 KiB
Python

"""Aborist CLI: ingest / search / verify / stats."""
from __future__ import annotations
import argparse
import json
import sys
from pathlib import Path
from aborist import __version__
from aborist.ingest import ingest_source, verify_random_sample
from aborist.search import FTS5Backend
from aborist.sources import WikipediaCurDump
from aborist.store import DEFAULT_DB_PATH, connect, stats
def _cmd_ingest(args: argparse.Namespace) -> int:
if args.source in ("wikipedia_cur", "wikipedia_old"):
if not args.path:
print(f"--path is required for {args.source}", file=sys.stderr)
return 2
from aborist.sources import WikipediaSqlDump
table = "cur" if args.source == "wikipedia_cur" else "old"
src = WikipediaSqlDump(path=args.path, table=table)
elif args.source == "html":
try:
from aborist.sources import HtmlPageSource
except ImportError:
print(
"html source requires extras: pip install 'aborist[html]'",
file=sys.stderr,
)
return 2
urls: list[str] = list(args.url or [])
if args.urls_from:
urls.extend(
line.strip()
for line in Path(args.urls_from).read_text(encoding="utf-8").splitlines()
if line.strip() and not line.lstrip().startswith("#")
)
if not urls:
print("html source needs --url or --urls-from", file=sys.stderr)
return 2
src = HtmlPageSource(urls, respect_robots=not args.no_robots)
else:
print(f"unknown source: {args.source}", file=sys.stderr)
return 2
conn = connect(args.db)
try:
result = ingest_source(conn, src, chunker_name=args.chunker, limit=args.limit)
finally:
conn.close()
print(json.dumps(result.__dict__, indent=2))
return 0
def _cmd_search(args: argparse.Namespace) -> int:
conn = connect(args.db)
try:
backend = FTS5Backend(conn)
hits = backend.search(args.query, limit=args.limit)
finally:
conn.close()
if args.json:
print(
json.dumps(
[
{
"document_root": h.document_root,
"document_uri": h.document_uri,
"chunk_idx": h.chunk_idx,
"snippet": h.snippet,
"score": h.score,
"audit_mode": h.audit_mode.value,
"title": h.title,
}
for h in hits
],
indent=2,
)
)
else:
for h in hits:
print(f"[{h.audit_mode.value}] {h.score:7.3f} {h.title or h.document_uri}")
print(f" chunk {h.chunk_idx} root={h.document_root[:16]}")
print(f" {h.snippet}")
print()
return 0
def _cmd_verify(args: argparse.Namespace) -> int:
conn = connect(args.db)
try:
result = verify_random_sample(conn, n=args.n)
finally:
conn.close()
print(json.dumps(result, indent=2))
return 0 if result["failed"] == 0 else 1
def _cmd_distill(args: argparse.Namespace) -> int:
from aborist.distill import get_distiller
from aborist.distill.runner import distill_existing
try:
distiller = get_distiller(args.process)
except ValueError as e:
print(str(e), file=sys.stderr)
return 2
conn = connect(args.db)
try:
result = distill_existing(
conn,
distiller,
kind=args.kind,
source_type=args.source_type,
limit=args.limit,
chunker_name=args.chunker,
)
finally:
conn.close()
print(json.dumps(result, indent=2))
return 0
def _cmd_ask(args: argparse.Namespace) -> int:
import os
from aborist.qa import ask
from aborist.qa.client import OpenAICompatibleClient, StubClient
base_url = args.endpoint or os.environ.get(
"ABORIST_LLM_ENDPOINT", "https://uncloseai.com/v1"
)
model = args.model or os.environ.get(
"ABORIST_LLM_MODEL",
"adamo1139/Hermes-3-Llama-3.1-8B-FP8-Dynamic",
)
revision = os.environ.get("ABORIST_LLM_REVISION", "")
quantization = os.environ.get("ABORIST_LLM_QUANTIZATION", "fp8-dynamic")
api_key = os.environ.get("ABORIST_LLM_API_KEY")
client: object
if args.dry_run:
client = StubClient(
answer=f"[STUB] would have answered '{args.question}' against root {args.document_root[:16]}"
)
else:
client = OpenAICompatibleClient(base_url=base_url, api_key=api_key)
conn = connect(args.db)
try:
result = ask(
conn,
document_root=args.document_root,
question=args.question,
client=client,
model_id=model,
revision=revision,
quantization=quantization,
)
finally:
conn.close()
print(json.dumps(result, indent=2))
return 0 if result.get("status") in ("cache_hit", "cache_miss_then_written") else 1
def _cmd_providence(args: argparse.Namespace) -> int:
"""List providence_cache records for a document URI or source_root."""
conn = connect(args.db)
try:
if args.document_uri:
rows = conn.execute(
"SELECT cache_key, question_text, answer_text, falsification_state, "
" hit_count, created_at FROM providence_cache "
"WHERE document_uri = ? ORDER BY created_at DESC",
(args.document_uri,),
).fetchall()
elif args.source_root:
rows = conn.execute(
"SELECT cache_key, question_text, answer_text, falsification_state, "
" hit_count, created_at FROM providence_cache "
"WHERE source_root = ? ORDER BY created_at DESC",
(args.source_root,),
).fetchall()
else:
rows = conn.execute(
"SELECT cache_key, question_text, answer_text, falsification_state, "
" hit_count, created_at FROM providence_cache "
"ORDER BY created_at DESC LIMIT ?",
(args.limit,),
).fetchall()
finally:
conn.close()
out = [
{
"cache_key": r["cache_key"],
"state": r["falsification_state"],
"hit_count": r["hit_count"],
"question": r["question_text"],
"answer": r["answer_text"],
"created_at": r["created_at"],
}
for r in rows
]
print(json.dumps(out, indent=2))
return 0
def _cmd_evict(args: argparse.Namespace) -> int:
from aborist.evict import evict_to_cold
conn = connect(args.db)
try:
result = evict_to_cold(
conn,
source_type=args.source_type,
older_than_days=args.older_than_days,
document_roots=args.document_root or None,
)
finally:
conn.close()
print(json.dumps(result, indent=2))
return 0
def _cmd_rehydrate(args: argparse.Namespace) -> int:
from aborist.evict import rehydrate
conn = connect(args.db)
try:
if args.all_cold:
roots = [
r["document_root"]
for r in conn.execute(
"SELECT DISTINCT document_root FROM chunks WHERE tier = 'cold'"
).fetchall()
]
else:
roots = list(args.document_root or [])
if not roots:
print(
"rehydrate needs --document-root R or --all-cold",
file=sys.stderr,
)
return 2
results = []
for r in roots:
res = rehydrate(conn, r)
res["document_root"] = r
results.append(res)
finally:
conn.close()
print(json.dumps(results, indent=2))
drift = sum(1 for r in results if r.get("status") == "drift_detected")
return 1 if drift else 0
def _cmd_stats(args: argparse.Namespace) -> int:
conn = connect(args.db)
try:
result = stats(conn)
finally:
conn.close()
print(json.dumps(result, indent=2))
return 0
def build_parser() -> argparse.ArgumentParser:
p = argparse.ArgumentParser(
prog="aborist",
description="An arborist for trees and forests of cross-linked information.",
)
p.add_argument("--version", action="version", version=f"aborist {__version__}")
p.add_argument(
"--db",
type=Path,
default=DEFAULT_DB_PATH,
help=f"path to aborist SQLite db (default: {DEFAULT_DB_PATH})",
)
sub = p.add_subparsers(dest="cmd", required=True)
ingest = sub.add_parser("ingest", help="ingest documents from a source")
ingest.add_argument(
"--source",
required=True,
choices=["wikipedia_cur", "wikipedia_old", "html"],
help="source type",
)
ingest.add_argument("--path", help="path to dump file (file-backed sources)")
ingest.add_argument(
"--url", action="append", help="URL to ingest (html source; repeatable)"
)
ingest.add_argument(
"--urls-from",
dest="urls_from",
help="file with one URL per line (html source)",
)
ingest.add_argument(
"--no-robots",
dest="no_robots",
action="store_true",
help="do not consult robots.txt (use only for explicitly authorized sites)",
)
ingest.add_argument(
"--chunker", default=None, help="chunker name (default: tok-512-v1)"
)
ingest.add_argument(
"--limit", type=int, default=None, help="cap number of documents"
)
ingest.set_defaults(func=_cmd_ingest)
search = sub.add_parser("search", help="keyword search (VISUAL audit mode)")
search.add_argument("query", help="query string")
search.add_argument("--limit", type=int, default=20)
search.add_argument("--json", action="store_true", help="output JSON")
search.set_defaults(func=_cmd_search)
verify = sub.add_parser(
"verify", help="round-trip Merkle proofs for N random documents"
)
verify.add_argument("-n", type=int, default=10)
verify.set_defaults(func=_cmd_verify)
distill = sub.add_parser(
"distill",
help="compress docs into Merkle-signed cores (surface->core or core->core)",
)
distill.add_argument(
"--process", default="first-sentence-v1", help="distiller name"
)
distill.add_argument(
"--kind",
choices=["surface", "core"],
default="surface",
help="source kind to scan; 'core' runs recursive distillation",
)
distill.add_argument(
"--source-type",
dest="source_type",
default=None,
help="restrict to one source_type",
)
distill.add_argument(
"--chunker", default=None, help="chunker for the core doc"
)
distill.add_argument(
"--limit", type=int, default=None, help="cap number of docs scanned"
)
distill.set_defaults(func=_cmd_distill)
ask_cmd = sub.add_parser(
"ask",
help="answer a question about a document (cache-first, STRICT)",
)
ask_cmd.add_argument(
"--document-root",
dest="document_root",
required=True,
help="document_root to ask about",
)
ask_cmd.add_argument(
"--question", required=True, help="question text"
)
ask_cmd.add_argument(
"--model",
default=None,
help="model_id (default $ABORIST_LLM_MODEL or hermes-3)",
)
ask_cmd.add_argument(
"--endpoint",
default=None,
help="OpenAI-compatible base URL (default $ABORIST_LLM_ENDPOINT)",
)
ask_cmd.add_argument(
"--dry-run",
dest="dry_run",
action="store_true",
help="use StubClient — no network call",
)
ask_cmd.set_defaults(func=_cmd_ask)
prov_cmd = sub.add_parser(
"providence",
help="list providence_cache records",
)
prov_cmd.add_argument("--document-uri", dest="document_uri", default=None)
prov_cmd.add_argument("--source-root", dest="source_root", default=None)
prov_cmd.add_argument("--limit", type=int, default=20)
prov_cmd.set_defaults(func=_cmd_providence)
evict_cmd = sub.add_parser(
"evict",
help="demote surface chunks hot→cold (NULL content, retain leaf_hash)",
)
evict_cmd.add_argument(
"--source-type",
dest="source_type",
default=None,
help="restrict to one source_type",
)
evict_cmd.add_argument(
"--older-than-days",
dest="older_than_days",
type=int,
default=None,
help="only evict docs older than N days",
)
evict_cmd.add_argument(
"--document-root",
action="append",
default=None,
help="explicit document_root(s) to evict; repeatable",
)
evict_cmd.set_defaults(func=_cmd_evict)
rehydrate_cmd = sub.add_parser(
"rehydrate",
help="refetch URI, verify leaves, restore cold content if root matches",
)
rehydrate_cmd.add_argument(
"--document-root",
action="append",
default=None,
help="explicit document_root(s) to rehydrate; repeatable",
)
rehydrate_cmd.add_argument(
"--all-cold",
dest="all_cold",
action="store_true",
help="rehydrate every document with cold chunks",
)
rehydrate_cmd.set_defaults(func=_cmd_rehydrate)
stats_cmd = sub.add_parser("stats", help="counts: docs, chunks, edges, audit")
stats_cmd.set_defaults(func=_cmd_stats)
return p
def main(argv: list[str] | None = None) -> int:
args = build_parser().parse_args(argv)
return args.func(args)
if __name__ == "__main__":
raise SystemExit(main())