arborist/docs/_source
russell@unturf.com 4b85eb1fcf
#000035 closed — v7 substrate spec into the repo; § 9.10 folded in
Brought the Merkle-AGI v7 formal substrate spec into the repo as
docs/_source/merkle-agi-dag-v7.rst (previously referenced only as the
un-version-controlled ~/Downloads/merkle-agi-dag_v7.txt). Section
structure converted to reStructuredText; inline math kept in the
source's literal notation; added to the docs/_source/index.rst
"Substrate" toctree (also added the pre-existing merkle-agi-v8-consensus
entry that was missing from it).

Folded ticket #000035's § 9.10 + § 9.10.1 (anchor PRG map φ_PRG;
dav1d-reviewed-final, little-endian, HMAC-SHA-512 / 32-byte seed) in at
their numbered positions, after § 9.9, with a .. note:: citing the
reference implementation (arborist/substrate/anchor_prg.py). #000035 ->
closed (Phase 1 + Phase 2 both landed); #000018 §9.2 ("which PRG?")
resolves to HMAC-SHA-512 with a 32-byte committed seed. Full upstream
v7 spec revision stays exogenous; this lands the amendment into the
tracked in-repo copy where future amendments also go.

(docs/TICKETS.md also carries the in-flight #000048 index-row update
from a concurrent session.)
2026-05-11 17:06:19 -04:00
..
_ext docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
_static docs: add Read the Docs configuration 2026-05-04 08:17:24 -04:00
api docs: open ticket #000022 (adapter LossReport) + federation doc-discoverability fix 2026-05-07 16:36:13 -04:00
bench.rst CLI: arborist v8 score → arborist substrate score 2026-05-10 09:12:34 -04:00
concepts.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
conf.py docs: footer attribution → russell@unturf./foxhop/TimeHexOn/legallydav1dpro unturf permacomputers 2026 2026-05-07 14:53:33 -04:00
cookbook.rst aborist/arborist 2026-05-07 09:31:49 -04:00
diagrams trim Makefile (-6 redundant targets) + better RTD docs 2026-05-04 09:03:03 -04:00
index.rst #000035 closed — v7 substrate spec into the repo; § 9.10 folded in 2026-05-11 17:06:19 -04:00
license.rst aborist/arborist 2026-05-07 09:31:49 -04:00
Makefile docs: add Sphinx API reference generation from docstrings 2026-05-04 07:55:34 -04:00
merkle-agi-dag-v7.rst #000035 closed — v7 substrate spec into the repo; § 9.10 folded in 2026-05-11 17:06:19 -04:00
merkle-agi-v7w-spatial-temporal.rst docs: clear all 39 cold-build Sphinx warnings (truly green) 2026-05-09 18:00:15 -04:00
merkle-agi-v8-consensus.rst #000012 Phase 1b: Merkle-AGI v8 consensus paper landed 2026-05-10 16:12:00 -04:00
pi-star.rst docs: propagate kernel/sub-battery counts to canonical surfaces 2026-05-09 17:27:02 -04:00
quickstart.rst aborist/arborist 2026-05-07 09:31:49 -04:00
README.md aborist/arborist 2026-05-07 09:31:49 -04:00
requirements.txt docs: switch to sphinx-book-theme for unified right-side project TOC 2026-05-04 09:13:14 -04:00
v8-fork-score.rst CLI: arborist v8 score → arborist substrate score 2026-05-10 09:12:34 -04:00

Arborist API Reference (Sphinx)

This directory contains Sphinx configuration to generate API documentation from docstrings.

Build

cd docs/_source
make html           # Generate HTML (output: _build/html/)
make text           # Generate text (output: _build/text/)
make clean          # Remove build artifacts

Or directly:

sphinx-build -b html . _build/html

View

After building, open _build/html/index.html in a browser.

Structure

  • conf.py — Sphinx configuration
  • index.rst — Main table of contents
  • api/ — Module documentation (one .rst per module category)
    • substrate.rst — Core data structures (merkle, document, wikitext)
    • storage.rst — SQLite schema (store, ingest, evict)
    • retrieval.rst — FTS5 search (search, sources, concepts)
    • qa.rst — Q&A pipeline (runner, query, verify, evidence, etc.)
    • distill.rst — Distillation (surface→core)
    • mesh.rst — Federation (gossip-based sync)
    • cli.rst — Command-line interface

What it replaces

This generated documentation replaces docs/modules.md (1200+ lines of static API reference). The docstrings in code are the source of truth; Sphinx extracts them automatically.

Adding new modules

  1. Add a docstring to the module (module-level docstring at the top of module.py)
  2. Add an .rst file in api/ that includes the module with automodule directive
  3. Reference it in index.rst
  4. Rebuild with make html

Theme

Uses furo theme (modern, responsive, search-enabled).

Autodoc directives

The .rst files use Sphinx automodule to extract:

  • Module docstrings
  • Class docstrings + members
  • Function signatures + docstrings
  • Source code links (:viewcode: extension)

See Sphinx autodoc docs.