arborist/tests
russell@unturf.com 6c6defbcb2
tests/doc_counts: db-where metric + tag prometheus controller (#000037 Phase 1+2)
Fan-out follow-up: extends AUTOCOUNT with a new metric for filtered
SQL-row claims, then tags fox's prometheus controller test surfaces
shipped this evening under #000037.

== Task 3: db-where metric ==

New metric ``db-where`` for tagging single-column equality
predicates. Target syntax::

    <table>?<column>=<value>
    <shard>:<table>?<column>=<value>

Resolves to ``SELECT COUNT(*) FROM <table> WHERE <column> = ?``
with ``<value>`` bound as a SQL parameter (no string
interpolation), so author typos or stray content can't escape
the predicate. Column + table names validated as bare
identifiers before string-interpolating into the query template;
sqlite3 connection opens with ``mode=ro`` URI flag.

Same skip-on-absence semantics as ``db-rows``: missing DB or
table yields a logged skip note, not a test failure. Sentinel
returns reuse the same _DB_MISSING / _TABLE_MISSING / _DB_ERROR
constants.

Smoke verified::

    _live_db_where('documents?source_type=claim_pack')      → 92
    _live_db_where('documents?source_type=wikipedia_xml')   → 866782
    _live_db_where('001.db:documents?source_type=wikipedia_xml')
                                                            → 867695
    _live_db_where('documents')  # malformed (no ?)         → -4

Tagged claims using the new metric (cookbook):

- L36 ``92 records total`` for the claim-pack source
- L349 ``The 92 chains have three quality tiers``

Both resolve to ``documents WHERE source_type='claim_pack'``
in shard ``000.db`` — the live count of claim-pack records.

L5 ``18/92 → 92/92`` historical narrative left untagged
(expressing a journey arc, not current state).

== Task 2: tag prometheus controller test surfaces ==

fox shipped two test files this evening under #000037 that
weren't previously inventoried in any reference doc:

- ``tests/test_prometheus.py`` — 36 tests covering Phase 1
  controller (commits ``f625cac`` + ``f9f5ae4``). Verifier-style
  discipline (NOT calculator pattern — it's a pure-function
  state-machine controller with no closed-form math).
- ``tests/test_prometheus_audit.py`` — 14 tests covering Phase 2
  ``controller_events`` sibling table (commit ``a786d6d``). Pins
  no-chain-mutation invariant (advisory writes never enter
  audit_events.event_hash preimage).

Added two paragraphs to cookbook §"Substrate-paper-spec'd
primitives" describing the test discipline + algorithmic surfaces
each pins. Renamed section header from
"(#000012 + #000018 + #000034)" to
"(#000012 + #000018 + #000034 + #000037)" to keep the
ticket-set roster current.

Two new rows in the test/code-density table:

  | substrate/prometheus.py       | 893 | 804 (36 tests) | 0.90 |
  | substrate/prometheus_audit.py | 200 | 388 (14 tests) | 1.94 |

All four counts AUTOCOUNT-tagged (2 inline prose + 2 table rows
= 4 new tags). prometheus_audit's ratio of 1.94 is high because
the test file pins a lot of write-path invariants for what is
nominally a small (200 LOC) sibling-table module — appropriate
for foundation-level audit-discipline code.

== Task 4: test_full_suite_total_fixture_count flake — investigated ==

Earlier today's transient ``-x`` flake (1 failed, 1799 passed)
did NOT reproduce in current tree state (2328 passed, 37 skipped
under same flags). Root-cause investigation:

- ``_DEFAULT_FIXTURES`` is read-only at module scope; no test
  mutates it.
- The test reads JSONL fixtures from ``bench/fixtures/`` via
  ``_run_one``; those files weren't being written by parallel
  tests.

Hypothesis (not confirmed, since flake didn't repro): transient
filesystem state during heavy-parallel-commit window
(``f625cac`` / ``a786d6d`` / ``6142437`` / ``f9f5ae4`` all
landed in succession around 17:23-17:24 EDT 2026-05-10 while my
test run was in flight). No structural defect identified. If
flake recurs, capture stdout + filesystem state at failure time
to confirm.

== Task 1: Walked fox's 6 evening commits via Explore agent ==

Agent reported what shipped under #000037 + #000012 evening
push (Prometheus-Σ Phases 0/1/2/dry-run + v8 consensus paper).
Findings used to drive task 2 above. Notable design choices
worth surfacing as reference:

- prometheus.py is **pure function** (no DB / LLM / scheduler);
  returns advisory ``ControllerDecision`` + optional proposal
  records, never mutations. Verifier-style test discipline.
- ``controller_events`` sibling table never enters
  ``audit_events.event_hash`` preimage — audit chain unaffected.
- Phase 3 sleep-sweep scheduler **deferred** in favor of
  read-only dry-run simulator surfacing 5 design constraints
  (chunk_size = Hermes concurrency NOT candidate pool;
  capital_cost flat=1.0 needs split; τ_qa per audit_mode;
  Target B = 4.4% canonical-shape match; quarantined-row veto
  exercises end-to-end). Calibration substrate for eventual
  scheduler.
- Per-branch controller latency 12.5 µs at chunk_size=4 → not
  the bottleneck; Hermes witness fan-out is.

v8 consensus paper at ``docs/_source/merkle-agi-v8-consensus.rst``
(834 lines; 11 parts) closes the loop from single-validator
Proof-of-Upgrade to multi-validator BFT selection. Phase 1c
(branch-set persistence) remains proposed-not-opened.

== Coverage ==

  Total tags after this commit:   54 (was 49; +5)
  Tags by metric:
    tests:           45 (+4 new prometheus + table rows)
    fixture-rows:     2
    db-rows:          3
    db-where:         2 (new metric, both 92 claim-pack)

  Files with tags:
    docs/warrant-substrate-cookbook.md             32 (+5)
    docs/calculator-test-patterns.md                8
    docs/soft-hash-channel-analysis.md              5
    docs/tickets/ticket-000006-bench-emergent...    4
    docs/seven-point-program.md                     3
    docs/tickets/ticket-000035-prg-choice-phi-prg.md 2

== Verification ==

  $ pytest tests/test_doc_counts.py -v
  3 passed in 2.60s

  $ pytest tests/ -q
  2328 passed, 37 skipped in 106.06s
2026-05-10 17:51:08 -04:00
..
crawler aborist/arborist 2026-05-07 09:31:49 -04:00
fixtures verify: strip wikitext from context before substring matching 2026-04-28 15:48:07 -04:00
__init__.py phase 0 explore: aborist core + sources + distill + evict 2026-04-27 07:53:18 -04:00
test_aliases.py tests/aliases: gap-fill list_term_aliases + tokenizer helpers (10 new tests) 2026-05-10 12:35:33 -04:00
test_anchor_prg.py tests: rename v8 → substrate + close 9-item checklist gaps across 3 files 2026-05-10 13:35:52 -04:00
test_bench_batteries.py bench/fixtures/5f: harvest 40 corpus-derived falsification fixtures (#000037#000025) 2026-05-10 17:47:07 -04:00
test_bench_qa_sweep.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_burn.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_burn_doc.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_canonical_cache.py #000027 + #000028: canonical projections persist; STRICT-WITNESSED reachable 2026-05-09 11:37:06 -04:00
test_canonical_projection.py ticket #000030 Phases 1+2: algebra-symbolic@v1 + calculus-derivative@v1 2026-05-09 12:35:18 -04:00
test_capital.py capital: land ticket #000020 (8-capital-form cost ledger) 2026-05-07 16:41:48 -04:00
test_claim_lattice.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_claim_pack.py ticket #000029: claim-pack source for axiom/theorem JSON bundles 2026-05-09 11:44:08 -04:00
test_cli_render.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_cli_session.py tests: unit + integration + functional coverage for this session's surface 2026-05-07 21:15:14 -04:00
test_cli_smoke.py tests/cli_smoke: 68 argparse-construction smoke tests for the full CLI surface 2026-05-10 13:16:06 -04:00
test_compress.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_concepts.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_concepts_extract.py tests/concepts/extract: 20 tests for synonym/idf/fts5 extractors (was zero coverage) 2026-05-10 12:47:58 -04:00
test_dag.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_demo_plot.py fan-out: witness audit + 5F extractor + function-sampled demo + docs 2026-05-09 13:19:30 -04:00
test_directives.py #000027 + #000028: canonical projections persist; STRICT-WITNESSED reachable 2026-05-09 11:37:06 -04:00
test_distill.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_distill_recursive.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_doc_counts.py tests/doc_counts: db-where metric + tag prometheus controller (#000037 Phase 1+2) 2026-05-10 17:51:08 -04:00
test_evict.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_fork_score.py tests/fork_score: 18 tests for v8 ForkScore (#000012 Phase 1a — was zero coverage) 2026-05-10 12:38:39 -04:00
test_frame.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_grok_source.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_html_source.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_ingest.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_inspect.py fan-out: warrant ladder wiring · witness follow-ups · 5F Phase 1d 2026-05-09 12:42:56 -04:00
test_journal.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_keys.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_llm_context_base.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_loss_report.py loss_report: land ticket #000022 (adapter LossReport sidecar) 2026-05-07 17:58:50 -04:00
test_memory_root.py memory: land ticket #000017 (memory-root lifelong learning summary) 2026-05-07 16:46:41 -04:00
test_merkle.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_aead.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_chain.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_cli.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_cli_pull.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_wire.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_mesh_wire_e2e.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_metacognition.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_migration_audit_mode.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_phi_alignment_probe.py tests: rename v8 → substrate + close 9-item checklist gaps across 3 files 2026-05-10 13:35:52 -04:00
test_pi_star.py fan-out: 5 π* graduations close the registry chapter 2026-05-09 13:04:43 -04:00
test_pi_star_algebra_symbolic.py ticket #000030 Phases 1+2: algebra-symbolic@v1 + calculus-derivative@v1 2026-05-09 12:35:18 -04:00
test_pi_star_algebra_symbolic_simplified.py ticket #000030 Phases 1b+3 + open #000031 2026-05-09 12:50:46 -04:00
test_pi_star_arithmetic.py tests/pi_star_arithmetic: 56 KATs for exact-rational arithmetic kernel 2026-05-10 15:54:37 -04:00
test_pi_star_calculus_derivative.py ticket #000030 Phases 1+2: algebra-symbolic@v1 + calculus-derivative@v1 2026-05-09 12:35:18 -04:00
test_pi_star_calculus_integral.py ticket #000030 Phases 1b+3 + open #000031 2026-05-09 12:50:46 -04:00
test_pi_star_code.py tests/pi_star_code: 32 KATs for Python-AST kernel 2026-05-10 15:54:49 -04:00
test_pi_star_combinatorics.py ticket #000032: combinatorics@v1 π* (pure-integer counting kernel) 2026-05-09 13:20:29 -04:00
test_pi_star_compositions.py fan-out: close #000030 · composition fixtures · witness end-to-end 2026-05-09 13:29:59 -04:00
test_pi_star_logic.py tests/pi_star_logic: 53 KATs for propositional CNF kernel 2026-05-10 15:54:43 -04:00
test_pi_star_phase_3_to_7.py fan-out: 5 π* graduations close the registry chapter 2026-05-09 13:04:43 -04:00
test_pi_star_protocol_and_registry.py tests/pi_star: 21 tests for protocol + registry (foundation, was untested) 2026-05-10 12:44:13 -04:00
test_pi_star_tabular.py fan-out: 5 π* graduations close the registry chapter 2026-05-09 13:04:43 -04:00
test_pi_star_time_series.py tests/pi_star_time_series: 35 KATs for temporal-signal kernel 2026-05-10 15:54:55 -04:00
test_prometheus.py #000037 Phase 1 continued: §14 row 4 + §13 step 11 + weight-tunable gates 2026-05-10 16:56:18 -04:00
test_prometheus_audit.py arborist/substrate/prometheus_audit: Phase 2 advisory audit writes (#000037) 2026-05-10 16:32:02 -04:00
test_providence_source.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_qa.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_qa_progress.py tests/qa/progress: 31 tests for Progress emitter (was zero coverage) 2026-05-10 12:45:32 -04:00
test_qa_prompts.py tests/qa/prompts: 20 tests pinning load-bearing system prompts (was zero coverage) 2026-05-10 12:50:20 -04:00
test_qa_quality_live.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_quantifier_caps.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_quantifier_classifier.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_quantifier_phase4.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_quantifier_reminder.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_query.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_reclassify.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_repair.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_resume.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_search_fts5.py search/fts5: progressive-AND fallback + DF filter at OR-pool 2026-05-09 18:31:24 -04:00
test_selfmodel.py selfmodel: land ticket #000014 (identity record + falsification) 2026-05-07 16:36:34 -04:00
test_session_integration.py #000025 Phase 1e: 5F falsification motif coverage (§10.12 closed) 2026-05-10 16:04:34 -04:00
test_session_migrations.py tests: unit + integration + functional coverage for this session's surface 2026-05-07 21:15:14 -04:00
test_snapshot.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_soft_preflight.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_store_migration_memoization.py store: per-process migration memoization (#000026 Phase 1) 2026-05-08 12:48:48 -04:00
test_substrate_fork_score.py tests: rename v8 → substrate + close 9-item checklist gaps across 3 files 2026-05-10 13:35:52 -04:00
test_t3_bound_calculator.py tests/t3_bound_calculator: close the two checklist gaps from §3 audit 2026-05-10 13:26:30 -04:00
test_textbook_tex.py textbooks: TeX-source ingest closes pillars I + IV (Hilbert + Boole) 2026-05-09 16:06:53 -04:00
test_textbooks_manifest.py tests/textbooks_manifest: 43 tests for license-discipline gate (was zero coverage) 2026-05-10 13:02:17 -04:00
test_tfidf.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_vcs_source.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_verify.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_verify_json.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_versioned_ingest.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_warrant.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_warrant_authorship.py fan-out: warrant ladder wiring · witness follow-ups · 5F Phase 1d 2026-05-09 12:42:56 -04:00
test_warrant_chain.py ticket #000031 Phase 3: warrant-chain-aware verifier suppresses WARRANT_MISSING 2026-05-10 09:17:48 -04:00
test_warrant_resolver.py ticket #000031 follow-ups B-1 + B-2: alias attribution + source-side title author 2026-05-10 09:35:49 -04:00
test_weights.py tests/weights: 16 tests for WeightSet defaults + from_dict adapter 2026-05-10 12:41:49 -04:00
test_wikipedia_old.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_wikipedia_xml.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_wikitext.py aborist/arborist 2026-05-07 09:31:49 -04:00
test_witness.py fan-out: warrant ladder wiring · witness follow-ups · 5F Phase 1d 2026-05-09 12:42:56 -04:00
test_witness_to_5f.py fan-out: witness audit + 5F extractor + function-sampled demo + docs 2026-05-09 13:19:30 -04:00
test_world_namespace.py #000013 closed: v7-W spatial-temporal substrate paper + namespace 2026-05-09 15:00:05 -04:00