arborist/aborist
russell@unturf.com 1f5bf7318d
add corpus-level snapshots: single-hash identity for the forest
A snapshot_root is MerkleTree.build([sorted DISTINCT document_roots]).root
— one 32-byte hash naming the entire content-addressed forest at a
point in time. Two peers that ingested the same dump compute bit-
identical snapshot_roots, so cross-machine "are we synced?" becomes
an O(1) hash comparison; the same root doubles as the TF-IDF
scope_root we sketched in the mesh design (snapshot_root *is* a
scope), and pins Q&A answers to a verifiable corpus state.

Schema: one new table, additive over existing data.
  snapshots(snapshot_root PK, taken_at, audit_event_hash, doc_count,
            parent_snapshot, reason)
  + idx_snapshots_taken_at

API:
  compute_snapshot_root(conn, *, document_roots=None) -> (root, count)
  create_snapshot(conn, *, reason, parent_snapshot=None) -> dict
  verify_snapshot(conn, snapshot_root) -> dict (matches: bool)
  diff_against_current(conn, snapshot_root) -> dict (added/removed/unchanged)
  list_snapshots(conn, *, limit) -> list[dict]

CLI:
  aborist snapshot create [--reason "..."] [--parent <hex>]
  aborist snapshot list   [--limit N]
  aborist snapshot verify <snapshot_root>
  aborist snapshot diff   <snapshot_root>

Cross-shard: with --shards-dir + --db, the snapshot is computed over
the cluster-wide UNION view but persisted into args.db (a dedicated
snapshots store, conventionally ~/.aborist/shards/snapshots.db).
parent_snapshot auto-links to the latest prior snapshot in the
writer DB, giving a chain for free.

Each snapshot creation writes an audit_event of type 'snapshot_create'
with subject_root=snapshot_root, so the corpus's pinned states are
themselves tamper-evidently logged.

Defect caught + fixed during live test on the 2010 enwiki ingest:
verify and diff disagreed on the same connection because compute used
a list (with cross-shard duplicate document_roots) while diff used a
set. Two shards can land identical document_roots when canonicalize()
maps two structurally-similar pages to the same byte stream — rare
but real. Switched the underlying SQL to SELECT DISTINCT so a
membership snapshot is always order- AND multiplicity-independent.

Live test: 2010-11 enwiki corpus snapshotted at
  43797e46605de08dbab06cdcaf5be7ad78243b193c56f8580200dee6bcc7e1b9
  doc_count: 3,468,134 (after dedup)
verify + diff round-trip both report identical against current state.

11 new tests covering empty corpus, single-doc degenerate, order
independence, drift detection, audit-chain pinning, parent auto-link,
and idempotent creation on unchanged corpus. 136 tests + 1 skipped.
2026-04-27 21:29:10 -04:00
..
distill storage cheats + TF-IDF retrieval fix 2026-04-27 17:24:51 -04:00
mesh mesh: cryptographic foundation, off by default 2026-04-27 19:00:24 -04:00
qa retrieval: body-coverage sqrt rerank to counter BM25 short-doc bias 2026-04-27 19:36:30 -04:00
search storage cheats + TF-IDF retrieval fix 2026-04-27 17:24:51 -04:00
sources add git and mercurial repo sources for self-play 2026-04-27 18:17:39 -04:00
__init__.py phase 0 explore: aborist core + sources + distill + evict 2026-04-27 07:53:18 -04:00
cli.py add corpus-level snapshots: single-hash identity for the forest 2026-04-27 21:29:10 -04:00
compress.py storage cheats + TF-IDF retrieval fix 2026-04-27 17:24:51 -04:00
document.py phase 0 explore: aborist core + sources + distill + evict 2026-04-27 07:53:18 -04:00
evict.py storage cheats + TF-IDF retrieval fix 2026-04-27 17:24:51 -04:00
ingest.py storage cheats + TF-IDF retrieval fix 2026-04-27 17:24:51 -04:00
merkle.py phase 0 explore: aborist core + sources + distill + evict 2026-04-27 07:53:18 -04:00
progress.py progress reporter + structured benchmark 2026-04-27 11:37:20 -04:00
snapshot.py add corpus-level snapshots: single-hash identity for the forest 2026-04-27 21:29:10 -04:00
source.py phase 0 explore: aborist core + sources + distill + evict 2026-04-27 07:53:18 -04:00
store.py add corpus-level snapshots: single-hash identity for the forest 2026-04-27 21:29:10 -04:00