arborist/tests/test_qa_corpus_functional.py
russell@unturf.com d9fb6a9b69
wallet/fts-sidecar: real FTS5 in the cloud sidecar; delete custom BM25
Replaces the hand-rolled BM25 sidecar (arborist/wallet/sidecar.py, ~690
LOC) with a slim SQLite file that just COPIES the source shard's FTS5
shadow tables verbatim + minimal doc/chunk metadata. Cloud retrieval
then runs SQLite FTS5 bm25() on the same bytes the local shard uses —
bit-for-bit parity by construction. 5/5 source + audit_mode agreement
on the smoke fixture between local corpus-query and cloud-query against
the new manifest-fts.json.

Why
---
Custom binary sidecar was per-document BM25; main encyclopedia articles
got length-normalized so hard that on "why did the dinosaurs go extinct?"
"Edwina, the Dinosaur Who Didn't Know She Was Extinct" beat "Dinosaur"
(measured cloud-vs-local divergence). Local FTS5 indexes per-chunk so
each chunk is a moderate-length doc and the main article wins multiply.
Different granularity, not a tuning knob — fix is to use the same
indexer cloud-side.

What ships
----------
- arborist/wallet/fts_sidecar_build.py — builder. ATTACH source shard,
  copy documents (root/uri/title only), copy chunks (id/root/idx/leaf
  only, NO content), CREATE VIRTUAL TABLE chunks_fts/documents_fts with
  same DDL as source, bulk-copy the four shadow tables verbatim,
  VACUUM. 8.78 GB shard → 2.15 GB sidecar (24.5%) in ~45 s; full
  4-shard wiki corpus 37.4 GB → 8.1 GB (21.7%) in ~3 min.
- arborist/wallet/bucket.py: FtsSidecarShardClient — downloads slim
  sidecar once into ~/.arborist/sidecar-fts-cache/<hash>.idx.db, opens
  read-only sqlite3 (check_same_thread=False for parallel shard fan-
  out), runs FTS5 MATCH locally. Chunk content fetches via blobs/<hash>
  with HTTP-range big-shard fallback when blobs aren't published.
  MultiShardSidecarCorpus simplified to fts_sidecar_url ∨ bucket-direct
  (both are FTS5 backends; merge by raw bm25 MIN ascending).
- arborist/qa/corpus.py: SidecarBucketCorpus.higher_is_better=False
  (FTS5 bm25 is negative, lower=better). chunks_for_doc dispatches on
  fetch_chunk_body attr for the slim-FTS5 client. apply_title_boost
  imports tokenizer helpers from new arborist/qa/_text_norm.py.
- arborist/qa/_text_norm.py — fold_accents, numeral_expand,
  tokenize_text, STOPWORDS — extracted from the deleted sidecar.py so
  apply_title_boost keeps its lexical shape.
- arborist/cli.py: `arborist sidecar build-fts` subcommand; old
  `sidecar build`/`sidecar search` removed. cloud_query recognizes
  fts_sidecar_url + sidecar_url alike.
- Makefile: `sidecar-build-fts` + `sidecar-build-fts-all` targets;
  `sidecar-build` + `sidecar-search` removed.
- scripts/upload_fts_sidecars.py — boto3 producer: uploads slim
  sidecars to clones/sidecars-fts/<n>.idx.db, publishes
  clones/manifest-fts.json (4 wikipedia shards inherit existing
  shard_url for content fallback; ACL public-read; idempotent on
  size match). Existing manifest-sidecar.json untouched.
- tests/test_qa_corpus_functional.py + test_qa_corpus_integration.py
  converted from build_sidecar → build_fts_sidecar; 6 fixtures pass.
- bench/slim_fts_parity_bench.py — local 3-way bench
  (legacy/corpus/slim_fts) over the smoke fixture.

Validation
----------
- Per-shard FTS5 parity: slim sidecar returns IDENTICAL rowids + bm25
  scores to the source shard for top-10 of "dinosaurs extinct".
- 3-way bench (legacy local / corpus local / slim-FTS5 over real
  bucket fallback): 5/5 source agreement AND 5/5 audit_mode agreement
  between corpus and slim_fts. Q5 legacy disagreement (Edwina vs
  Dinosaur) is the pre-existing 2000-line query() retrieval quirk,
  unrelated.
- End-to-end cloud query against published manifest-fts.json (cold-
  start, ~149 s sidecar download once): STRICT · Dinosaur, every
  quote verified (2/2).
- Full pytest suite: 2737 passed, 28 skipped, 1 xfailed. One pre-
  existing failure (tests/test_doc_counts.py — claim_pack docs row-
  count drift) and one pre-existing cold_object failure, both reproduce
  on main HEAD.

Bucket state
------------
- s3://arborist/clones/sidecars-fts/00[0-3].idx.db (8.1 GB) — new
- s3://arborist/clones/manifest-fts.json — new
- s3://arborist/clones/manifest-sidecar.json — kept live (deprecated
  but still readable; downstream callers should switch to
  manifest-fts.json)
2026-05-31 10:43:03 -04:00

265 lines
9.3 KiB
Python

"""Functional tests — full retrieval → context → LLM → verify, both adapters.
Builds the smallest plausible "ask-shaped" pipeline that the future
Corpus-aware query() refactor will collapse into:
hits = corpus.fts_body(question, limit=k)
chunks = []
for h in hits:
chunks.extend(corpus.chunks_for_doc(h.document_root, limit=1))
evidence_map = build_evidence_map([...chunks-as-evidence-dicts...])
prompt = system + EVIDENCE + question + reminder
answer = chat.chat_completion(...)
verdict = verify_claim_lattice(answer, evidence_map)
This module drives that pipeline through SqliteShardCorpus AND
SidecarBucketCorpus with a StubClient (deterministic answer) and
asserts both reach the same audit_mode + cite the same primary
source_root.
It's the SMALLEST canary for the "DRY the cloud + local diff" work:
when the refactor moves query() onto the protocol, this test gates
both adapters in one go.
"""
from __future__ import annotations
import os
import shutil
import sqlite3
import threading
from http.server import ThreadingHTTPServer
from arborist.wallet._range_http_server import RangeHandler as _RangeHandler
from pathlib import Path
from typing import Iterator
import pytest
apsw = pytest.importorskip("apsw")
from arborist.document import Document
from arborist.ingest import ingest_source
from arborist.qa.client import StubClient
from arborist.qa.corpus import SidecarBucketCorpus, SqliteShardCorpus
from arborist.qa.evidence import (
build_evidence_map,
render_evidence_map,
)
from arborist.qa.prompts import (
CLAIM_LATTICE_GROUNDING_REMINDER,
CLAIM_LATTICE_SYSTEM_PROMPT,
)
from arborist.qa.verify import verify_claim_lattice
from arborist.source import Source
from arborist.store import connect
from arborist.wallet.bucket import BucketManifest, MultiShardSidecarCorpus
from arborist.wallet.fts_sidecar_build import build as build_fts_sidecar
# ---------------------------------------------------------------------------
# Fixture: same corpus exposed via both adapters.
# ---------------------------------------------------------------------------
CORPUS_DOCS = [
Document(
uri="test://anarchism", source_type="test", title="Anarchism",
content=(
"Anarchism is a political philosophy that promotes a stateless "
"society. " * 6
+ 'The phrase "abolition of authority" describes the core principle '
'of anarchism. ' * 4
),
),
Document(
uri="test://capital", source_type="test", title="Capital",
content=(
"The eight forms of capital include living, social, intellectual, "
"material, financial, experiential, cultural, and spiritual. " * 6
),
),
Document(
uri="test://noise-1", source_type="test", title="Random Noise",
content=("Lorem ipsum dolor sit amet. " * 12),
),
]
class _FakeSource(Source):
source_type = "test"
def __init__(self, ds): self.ds = ds
def iter_documents(self) -> Iterator[Document]:
yield from self.ds
@pytest.fixture
def both_adapters(tmp_path: Path):
"""Yield (sqlite_corpus, sidecar_corpus) over the same content."""
db = tmp_path / "shard.db"
c0 = connect(db)
ingest_source(c0, _FakeSource(CORPUS_DOCS))
c0.execute("PRAGMA wal_checkpoint(FULL)")
c0.close()
# bucket layout + slim FTS5 sidecar
bucket = tmp_path / "bucket"
clones = bucket / "clones" / "snap-1"
clones.mkdir(parents=True)
bucket_shard = clones / "000.db"
shutil.copy(db, bucket_shard)
sidecar_path = clones / "000.idx.db"
build_fts_sidecar(str(bucket_shard), str(sidecar_path), verbose=False)
# in-process Range-aware server
cwd_before = os.getcwd()
os.chdir(bucket)
httpd = ThreadingHTTPServer(("127.0.0.1", 0), _RangeHandler)
port = httpd.server_address[1]
threading.Thread(target=httpd.serve_forever, daemon=True).start()
base_url = f"http://127.0.0.1:{port}"
manifest = BucketManifest(
shards=[{
"url": f"{base_url}/clones/snap-1/000.db",
"shard_idx": 0,
"label": "test-shard",
"fts_sidecar_url": f"{base_url}/clones/snap-1/000.idx.db",
}],
blob_base=f"{base_url}/blobs",
snapshot_root=None,
snapshot_ts=None,
)
multi = MultiShardSidecarCorpus(
manifest, fts_sidecar_cache_dir=str(tmp_path / "cache"),
)
conn = connect(db)
try:
yield SqliteShardCorpus(conn), SidecarBucketCorpus(multi)
finally:
multi.close()
conn.close()
httpd.shutdown()
os.chdir(cwd_before)
# ---------------------------------------------------------------------------
# The shared end-to-end harness — the prototype of what query() will do
# once it takes a Corpus.
# ---------------------------------------------------------------------------
def _retrieve_and_verify(
corpus, question: str, *, stub_answer: str, top_k: int = 3,
):
"""Mini retrieval pipeline through the Corpus protocol. Returns a
dict with audit_mode + cited document_roots + verdict shape."""
hits = corpus.fts_body(question, limit=top_k)
if not hits:
return {"audit_mode": "UNGROUNDED", "n_quotes": 0, "n_verified": 0,
"sources": [], "cited_roots": set()}
chunks_payload: list[dict] = []
for rank, h in enumerate(hits, 1):
rows = corpus.chunks_for_doc(h.document_root, limit=1)
if not rows:
continue
r = rows[0]
chunks_payload.append({
"source_root": h.document_root,
"document_uri": h.document_uri,
"title": h.title,
"chunk_idx": r.idx,
"chunk_root": r.leaf_hash or "0" * 64,
"span": r.content[:1200],
"source_role": (
"primary_answer_source" if rank == 1 else "background_source"
),
})
evidence_map = build_evidence_map(chunks_payload)
evidence_text = render_evidence_map(evidence_map)
messages = [
{"role": "system", "content": CLAIM_LATTICE_SYSTEM_PROMPT},
{"role": "user", "content": (
f"EVIDENCE:\n\n{evidence_text}\n\n"
f"QUESTION: {question}\n\n"
f"{CLAIM_LATTICE_GROUNDING_REMINDER}"
)},
]
answer = StubClient(answer=stub_answer).chat_completion(
messages, model="stub", temperature=0.0,
)
verdict = verify_claim_lattice(
answer, evidence_map, question=question, warrant_check_enabled=False,
)
cited_roots = {h.document_root for h in hits}
return {
"audit_mode": verdict["audit_mode"],
"n_quotes": verdict["n_quotes"],
"n_verified": verdict["n_verified"],
"cited_roots": cited_roots,
"primary_root": hits[0].document_root if hits else "",
"primary_title": hits[0].title if hits else "",
}
# ---------------------------------------------------------------------------
# Tests
# ---------------------------------------------------------------------------
def test_pipeline_grounds_anarchism_through_both_adapters(both_adapters):
"""Verbatim-quote answer should land at the same audit_mode on both
adapters and primary-cite the Anarchism doc on both."""
sq, sc = both_adapters
question = "what is the core principle of anarchism?"
# Verbatim from CORPUS_DOCS[0]: 'abolition of authority'
stub = (
'The core principle of anarchism is the "abolition of authority". [E1]'
)
sq_result = _retrieve_and_verify(sq, question, stub_answer=stub)
sc_result = _retrieve_and_verify(sc, question, stub_answer=stub)
assert sq_result["audit_mode"] == sc_result["audit_mode"], (
f"audit_mode differs: sqlite={sq_result['audit_mode']} "
f"sidecar={sc_result['audit_mode']}"
)
# Both must surface the Anarchism doc as primary.
assert "Anarchism" in sq_result["primary_title"]
assert "Anarchism" in sc_result["primary_title"]
def test_pipeline_handles_noise_question_consistently(both_adapters):
"""An off-topic question (no matching doc) must produce UNGROUNDED
/ empty-evidence on both adapters."""
sq, sc = both_adapters
question = "what is the population of mars?"
stub = "Mars has no population because it is uninhabited. [E1]"
sq_result = _retrieve_and_verify(sq, question, stub_answer=stub)
sc_result = _retrieve_and_verify(sc, question, stub_answer=stub)
# Off-topic should land at UNGROUNDED or HYBRID on BOTH paths —
# neither corpus has Mars content. STRICT would be a false positive.
for r in (sq_result, sc_result):
assert r["audit_mode"] in ("UNGROUNDED", "HYBRID"), (
f"unexpected STRICT on off-topic: {r}"
)
def test_pipeline_chunks_for_primary_are_same_bytes(both_adapters):
"""Both adapters must surface byte-identical chunk content for the
same document_root — wallet-side Merkle verification depends on it."""
sq, sc = both_adapters
question = "anarchism"
sq_hits = sq.fts_body(question, limit=1)
assert sq_hits
droot = sq_hits[0].document_root
sq_chunks = sq.chunks_for_doc(droot)
sc_chunks = sc.chunks_for_doc(droot)
assert sq_chunks and sc_chunks
for a, b in zip(sq_chunks, sc_chunks):
assert a.content == b.content, (
f"chunk[{a.idx}] content differs by adapter"
)
assert a.leaf_hash == b.leaf_hash