# aborist — Makefile entry points # Every workflow lives behind a `make` target. Bare python commands are not # the user interface. # Tools and config PYTHON ?= python3 VENV ?= .venv PIP := $(VENV)/bin/pip PY := $(VENV)/bin/python ABORIST := $(VENV)/bin/aborist # Data + DB DATA_DIR ?= data WP_BASE_URL ?= https://dumps.wikimedia.org/archive/2003/2003-05-16/en WP_CUR := $(DATA_DIR)/20030516_cur_tablesql.bz2 WP_OLD_1 := $(DATA_DIR)/old_tablesqlbz2.1 WP_OLD_2 := $(DATA_DIR)/old_tablesqlbz2.2 WP_OLD := $(DATA_DIR)/20030516_old_tablesql.bz2 # Back-compat alias (older callers used WP_DUMP for the cur snapshot). WP_DUMP := $(WP_CUR) DB ?= $(HOME)/.aborist/aborist.db # Smoke-test caps so make all stays fast INGEST_LIMIT ?= 500 VERIFY_N ?= 10 SEARCH_Q ?= computer .PHONY: all bootstrap fetch fetch-cur fetch-old fetch-xml fetch-abstract \ ingest ingest-cur ingest-old ingest-xml ingest-xml-history \ ingest-xml-attached ingest-abstract \ ingest-grok ingest-grok-media \ ingest-self ingest-git ingest-hg \ verify search stats test docs chain-check chain-check-shards \ falsify burn clean clean-db clean-data help all: bootstrap fetch-cur ingest-cur verify stats ## bootstrap → fetch cur → ingest cur → verify → stats help: ## show this help @awk 'BEGIN{FS=":.*##"} /^[a-zA-Z0-9_-]+:.*##/{printf " %-16s %s\n", $$1, $$2}' $(MAKEFILE_LIST) $(VENV)/bin/activate: pyproject.toml $(PYTHON) -m venv $(VENV) $(PIP) install --upgrade pip wheel $(PIP) install -e '.[dev]' @touch $(VENV)/bin/activate bootstrap: $(VENV)/bin/activate ## create venv and install editable package $(DATA_DIR): mkdir -p $(DATA_DIR) $(WP_CUR): | $(DATA_DIR) @echo ">> fetching $(WP_BASE_URL)/$$(basename $@)" curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)" $(WP_OLD_1): | $(DATA_DIR) @echo ">> fetching $(WP_BASE_URL)/$$(basename $@)" curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)" $(WP_OLD_2): | $(DATA_DIR) @echo ">> fetching $(WP_BASE_URL)/$$(basename $@)" curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)" # The two old_tablesqlbz2.{1,2} parts are split halves of a single bzip2 # stream (.1 is exactly 640 MiB). Concatenate to get a working bz2 file. $(WP_OLD): $(WP_OLD_1) $(WP_OLD_2) @echo ">> concatenating old dump parts" cat $(WP_OLD_1) $(WP_OLD_2) > $@ fetch-cur: $(WP_CUR) ## download cur table dump (~82 MB) fetch-old: $(WP_OLD) ## download old (revision history) parts and concatenate (~893 MB) fetch: fetch-cur fetch-old ## download all 3 files (cur + old.1 + old.2 + concat) ingest-cur: bootstrap fetch-cur ## ingest INGEST_LIMIT cur articles $(ABORIST) --db $(DB) ingest --source wikipedia_cur --path $(WP_CUR) --limit $(INGEST_LIMIT) ingest-old: bootstrap fetch-old ## ingest INGEST_LIMIT old (history) revisions $(ABORIST) --db $(DB) ingest --source wikipedia_old --path $(WP_OLD) --limit $(INGEST_LIMIT) # Phase 1b: parallel shards into ONE shared SQLite. Workers parallelize # parser CPU; writes serialize at the WAL writer-lock. ~1.3x wall on 4 cores. SHARDS ?= 4 ingest-cur-parallel: bootstrap fetch-cur ## ingest cur with SHARDS=N processes -> one shared DB @for i in $$(seq 0 $$(($(SHARDS) - 1))); do \ $(ABORIST) --db $(DB) ingest --source wikipedia_cur --path $(WP_CUR) \ --shard $$i/$(SHARDS) & \ done; wait ingest-old-parallel: bootstrap fetch-old ## ingest old history with SHARDS=N processes -> one shared DB @for i in $$(seq 0 $$(($(SHARDS) - 1))); do \ $(ABORIST) --db $(DB) ingest --source wikipedia_old --path $(WP_OLD) \ --shard $$i/$(SHARDS) & \ done; wait # Phase 2: attach-forever sharding. Each shard owns its own SQLite file — # no WAL contention. Reads via `aborist --shards-dir ` attach # all shards as UNION views. "Merge cost" = 0. SHARDS_DIR ?= $(HOME)/.aborist/shards ingest-cur-attached: bootstrap fetch-cur ## sharded ingest, no WAL contention (Phase 2) @mkdir -p $(SHARDS_DIR) @for i in $$(seq 0 $$(($(SHARDS) - 1))); do \ $(ABORIST) ingest --source wikipedia_cur --path $(WP_CUR) \ --shards-dir $(SHARDS_DIR) --shard $$i/$(SHARDS) & \ done; wait ingest-old-attached: bootstrap fetch-old ## sharded ingest of old history (Phase 2) @mkdir -p $(SHARDS_DIR) @for i in $$(seq 0 $$(($(SHARDS) - 1))); do \ $(ABORIST) ingest --source wikipedia_old --path $(WP_OLD) \ --shards-dir $(SHARDS_DIR) --shard $$i/$(SHARDS) & \ done; wait stats-shards: bootstrap ## cross-shard stats via UNION views over $(SHARDS_DIR) $(ABORIST) --shards-dir $(SHARDS_DIR) stats ACTIVITY_LIMIT ?= 10 activity: bootstrap ## recent Q&A + freshly cached docs (agent timeline) $(ABORIST) --shards-dir $(SHARDS_DIR) activity --limit $(ACTIVITY_LIMIT) falsify: bootstrap ## mark a cached answer wrong: make falsify KEY=hex REASON='why' @if [ -z "$(KEY)" ]; then echo "usage: make falsify KEY= REASON='why'" >&2; exit 2; fi $(ABORIST) --shards-dir $(SHARDS_DIR) providence --falsify $(KEY) --reason "$(REASON)" burn: bootstrap ## delete a leaf with no children: make burn KEY=hex REASON='why' [FORCE=1] @if [ -z "$(KEY)" ]; then echo "usage: make burn KEY= REASON='why' [FORCE=1]" >&2; exit 2; fi $(ABORIST) --shards-dir $(SHARDS_DIR) burn --cache-key $(KEY) --reason "$(REASON)" $(if $(FORCE),--force,) # Multi-source RAG query against the shard cluster. # Usage: make query Q="What is anarcho-capitalism?" QUERY_TOP_K ?= 8 query: bootstrap ## ask the corpus a question; sources are picked across shards @if [ -z "$$Q" ] && [ -z "$(Q)" ]; then \ echo "usage: make query Q=\"your question\""; exit 2; \ fi $(ABORIST) --shards-dir $(SHARDS_DIR) query --top-k $(QUERY_TOP_K) "$(Q)" query-dry: bootstrap ## like 'make query' but skip the LLM call (dry-run) @if [ -z "$$Q" ] && [ -z "$(Q)" ]; then \ echo "usage: make query-dry Q=\"your question\""; exit 2; \ fi $(ABORIST) --shards-dir $(SHARDS_DIR) query --top-k $(QUERY_TOP_K) --dry-run "$(Q)" verify-shards: bootstrap ## cross-shard Merkle round-trip on a random sample $(ABORIST) --shards-dir $(SHARDS_DIR) verify -n $(VERIFY_N) analyze-shards: bootstrap ## cross-shard compression spectrum + audit integrity $(ABORIST) --shards-dir $(SHARDS_DIR) analyze # Audit-chain integrity probe: counts dangling prev_event_hash references. # Faster than `analyze` and trivially scriptable. 0 = chain intact. define CHAIN_CHECK_SQL SELECT COUNT(*) AS chain_breaks FROM audit_events a1 LEFT JOIN audit_events a2 ON a2.event_hash = a1.prev_event_hash WHERE a1.prev_event_hash IS NOT NULL AND a2.event_hash IS NULL endef export CHAIN_CHECK_SQL chain-check: ## audit-chain break count for $(DB) (0 = intact) @printf '%s ' "$(DB)"; sqlite3 $(DB) "$$CHAIN_CHECK_SQL" chain-check-shards: ## audit-chain break count for every *.db in $(SHARDS_DIR) @for db in $(SHARDS_DIR)/*.db; do \ printf '%s ' "$$db"; sqlite3 "$$db" "$$CHAIN_CHECK_SQL"; \ done # Sequential per-shard distill (one process iterates all shards). distill-shards: bootstrap ## distill every shard in $(SHARDS_DIR), surface -> depth=1 cores $(ABORIST) --shards-dir $(SHARDS_DIR) distill --process first-sentence-v1 --kind surface # Parallel per-shard distill: one process per shard. No DB contention # because each shard is its own file. distill-shards-parallel: bootstrap ## one distill process per shard (parallel) @for shard in $(SHARDS_DIR)/*.db; do \ $(ABORIST) --db $$shard distill --process first-sentence-v1 --kind surface & \ done; wait # TF-IDF cores serve as enriched titles for retrieval — distinctive # low-frequency terms that surface in body text get promoted into # something queryable without a real title match. distill-shards-tfidf-parallel: bootstrap ## TF-IDF cores per shard, in parallel @for shard in $(SHARDS_DIR)/*.db; do \ $(ABORIST) --db $$shard distill --process tfidf-keywords-v1 --kind surface & \ done; wait ingest: ingest-cur ## default ingest = cur (use ingest-old or *-parallel for full) # Grok account-export ETL. # Point GROK_EXPORT at the directory xAI delivered (the one containing # `ttl/30d/export_data//prod-grok-backend.json`). The source class # auto-walks down to find the JSON. GROK_EXPORT ?= $(HOME)/Downloads/ab8ef1f0-0d08-4f87-89c2-d4509e18115b ingest-grok: bootstrap ## ingest Grok conversations into $(DB) (single-DB mode) $(ABORIST) --db $(DB) ingest --source grok_export --path $(GROK_EXPORT) ingest-grok-media: bootstrap ## ingest Grok media-generation prompts into $(DB) $(ABORIST) --db $(DB) ingest --source grok_media --path $(GROK_EXPORT) # Grok lives in its own shard inside the attach-forever cluster so cross- # shard queries (`make query`) see it alongside the Wikipedia 2003 corpus. # Single shard (rank 0/1) — Grok conversations are private and small. GROK_SHARD := $(SHARDS_DIR)/grok.db ingest-grok-attached: bootstrap ## ingest Grok conversations into $(GROK_SHARD) @mkdir -p $(SHARDS_DIR) $(ABORIST) --db $(GROK_SHARD) ingest --source grok_export --path $(GROK_EXPORT) --resume ingest-grok-media-attached: bootstrap ## ingest Grok media prompts into $(GROK_SHARD) @mkdir -p $(SHARDS_DIR) $(ABORIST) --db $(GROK_SHARD) ingest --source grok_media --path $(GROK_EXPORT) --resume # ---------------------------------------------------------------------------- # Phase IV (2006+) Wikipedia XML dumps. Drop-in for any dated snapshot in # the dumps.wikimedia.org/archive tree by overriding WP_XML_YEAR/MONTH/DATE # (and WP_XML_LANG for non-English wikis). # # Defaults point at enwiki 20101011 (2010-11 archive), the largest snapshot # in the archive — 6.2 GB compressed, ~3.4M articles. # Other useful snapshots: # make fetch-xml WP_XML_YEAR=2006 WP_XML_MONTH=2006-07 WP_XML_DATE=20061104 # make fetch-xml WP_XML_YEAR=2006 WP_XML_MONTH=2006-12 WP_XML_DATE=20061130 # ---------------------------------------------------------------------------- WP_XML_LANG ?= en WP_XML_YEAR ?= 2010 WP_XML_MONTH ?= 2010-11 WP_XML_DATE ?= 20101011 WP_XML_BASE_URL ?= https://dumps.wikimedia.org/archive/$(WP_XML_YEAR)/$(WP_XML_MONTH)/$(WP_XML_LANG)wiki/$(WP_XML_DATE) WP_XML_FILE ?= $(WP_XML_LANG)wiki-$(WP_XML_DATE)-pages-articles.xml.bz2 WP_XML := $(DATA_DIR)/$(WP_XML_FILE) WP_ABSTRACT_FILE ?= $(WP_XML_LANG)wiki-$(WP_XML_DATE)-abstract.xml WP_ABSTRACT := $(DATA_DIR)/$(WP_ABSTRACT_FILE) $(WP_XML): | $(DATA_DIR) @echo ">> fetching $(WP_XML_BASE_URL)/$(WP_XML_FILE)" curl -fL --retry 3 -o $@ "$(WP_XML_BASE_URL)/$(WP_XML_FILE)" $(WP_ABSTRACT): | $(DATA_DIR) @echo ">> fetching $(WP_XML_BASE_URL)/$(WP_ABSTRACT_FILE)" curl -fL --retry 3 -o $@ "$(WP_XML_BASE_URL)/$(WP_ABSTRACT_FILE)" fetch-xml: $(WP_XML) ## download Phase IV XML cur dump (default: enwiki 20101011, 6.2 GB) fetch-abstract: $(WP_ABSTRACT) ## download Phase IV abstract.xml (default: enwiki 20101011, ~3 GB) ingest-xml: bootstrap fetch-xml ## ingest INGEST_LIMIT pages from $(WP_XML) $(ABORIST) --db $(DB) ingest --source wikipedia_xml --path $(WP_XML) --limit $(INGEST_LIMIT) ingest-xml-history: bootstrap ## ingest every revision (multi-revision mode); set WP_XML to a pages-meta-history file $(ABORIST) --db $(DB) ingest --source wikipedia_xml_history --path $(WP_XML) --limit $(INGEST_LIMIT) # Sharded XML ingest into the attach-forever cluster — same pattern as # ingest-cur-attached. One process per shard, one SQLite file per shard, # zero WAL contention. ingest-xml-attached: bootstrap fetch-xml ## sharded XML ingest, one process per shard @mkdir -p $(SHARDS_DIR) @for i in $$(seq 0 $$(($(SHARDS) - 1))); do \ $(ABORIST) ingest --source wikipedia_xml --path $(WP_XML) \ --shards-dir $(SHARDS_DIR) --shard $$i/$(SHARDS) & \ done; wait ingest-abstract: bootstrap fetch-abstract ## ingest INGEST_LIMIT abstract docs from $(WP_ABSTRACT) $(ABORIST) --db $(DB) ingest --source wikipedia_abstract --path $(WP_ABSTRACT) --limit $(INGEST_LIMIT) # ---------------------------------------------------------------------------- # Self-ingest: aborist consults its own source code as a queryable corpus. # Re-running picks up new commits — same path + new content gets a fresh # document_root chained to the prior version via a `supersedes` edge, so the # audit chain grows as the repo grows. Lands in a dedicated shard file so it # doesn't compete with the wikipedia/grok shards' WAL writer lock. # # Override SELF_REPO to ingest a different repo's tree. # ---------------------------------------------------------------------------- SELF_REPO ?= $(CURDIR) SELF_SHARD := $(SHARDS_DIR)/aborist-self.db ingest-self: bootstrap ## ingest this repo's HEAD into a dedicated shard @mkdir -p $(SHARDS_DIR) $(ABORIST) --db $(SELF_SHARD) ingest --source git_repo --path $(SELF_REPO) # Generic git-repo ingest: aim it at any local clone via GIT_REPO=... GIT_REPO ?= $(CURDIR) GIT_SHARD := $(SHARDS_DIR)/$(notdir $(GIT_REPO))-git.db ingest-git: bootstrap ## ingest GIT_REPO= into its own shard @mkdir -p $(SHARDS_DIR) $(ABORIST) --db $(GIT_SHARD) ingest --source git_repo --path $(GIT_REPO) # Generic hg-repo ingest. HG_REPO=. HG_REPO ?= HG_SHARD := $(SHARDS_DIR)/$(notdir $(HG_REPO))-hg.db ingest-hg: bootstrap ## ingest HG_REPO= (mercurial) into its own shard @if [ -z "$(HG_REPO)" ]; then echo "usage: make ingest-hg HG_REPO=/path/to/repo" >&2; exit 2; fi @mkdir -p $(SHARDS_DIR) $(ABORIST) --db $(HG_SHARD) ingest --source hg_repo --path $(HG_REPO) verify: bootstrap ## round-trip Merkle proofs for VERIFY_N random documents $(ABORIST) --db $(DB) verify -n $(VERIFY_N) search: bootstrap ## keyword search; override SEARCH_Q (or pass Q=...) $(ABORIST) --db $(DB) search '$(if $(Q),$(Q),$(SEARCH_Q))' stats: bootstrap ## counts: documents, chunks, edges, audit chain $(ABORIST) --db $(DB) stats test: bootstrap ## run pytest suite $(VENV)/bin/pytest -q DOT_SRCS := $(wildcard docs/diagrams/*.dot) DOT_PNGS := $(DOT_SRCS:.dot=.png) docs/diagrams/%.png: docs/diagrams/%.dot dot -Tpng $< -o $@ docs: $(DOT_PNGS) ## render docs/diagrams/*.dot -> .png via graphviz # Reproducible micro-benchmark over a fixed slice of cur. Lets you compare # ETL throughput across configs and catches regressions on optimization # work. Override BENCH_DOCS=N (default 5000). BENCH_DOCS ?= 5000 BENCH_DIR := /tmp/aborist-bench bench: bootstrap fetch-cur ## benchmark serial vs parallel-shared vs attached at $(BENCH_DOCS) docs @bash bench/run.sh $(BENCH_DOCS) clean: ## remove venv + caches (keeps fetched data and db) rm -rf $(VENV) .pytest_cache **/__pycache__ aborist.egg-info find . -type d -name __pycache__ -prune -exec rm -rf {} + clean-db: ## drop the aborist db (keeps fetched data and venv) rm -f $(DB) $(DB)-journal $(DB)-wal $(DB)-shm clean-data: ## remove fetched dumps rm -rf $(DATA_DIR)