# aborist — Makefile entry points
# Every workflow lives behind a `make` target. Bare python commands are not
# the user interface.
# Tools and config
PYTHON ?= python3
VENV ?= .venv
PIP := $(VENV)/bin/pip
PY := $(VENV)/bin/python
ABORIST := $(VENV)/bin/aborist
# Data + DB
DATA_DIR ?= data
WP_BASE_URL ?= https://dumps.wikimedia.org/archive/2003/2003-05-16/en
WP_CUR := $(DATA_DIR)/20030516_cur_tablesql.bz2
WP_OLD_1 := $(DATA_DIR)/old_tablesqlbz2.1
WP_OLD_2 := $(DATA_DIR)/old_tablesqlbz2.2
WP_OLD := $(DATA_DIR)/20030516_old_tablesql.bz2
# Back-compat alias (older callers used WP_DUMP for the cur snapshot).
WP_DUMP := $(WP_CUR)
DB ?= $(HOME)/.aborist/aborist.db
# Smoke-test caps so make all stays fast
INGEST_LIMIT ?= 500
VERIFY_N ?= 10
SEARCH_Q ?= computer
.PHONY: all bootstrap fetch fetch-cur fetch-old ingest ingest-cur ingest-old \
verify search stats test clean clean-db clean-data help
all: bootstrap fetch-cur ingest-cur verify stats ## bootstrap → fetch cur → ingest cur → verify → stats
help: ## show this help
@awk 'BEGIN{FS=":.*##"} /^[a-zA-Z0-9_-]+:.*##/{printf " %-16s %s\n", $$1, $$2}' $(MAKEFILE_LIST)
$(VENV)/bin/activate: pyproject.toml
$(PYTHON) -m venv $(VENV)
$(PIP) install --upgrade pip wheel
$(PIP) install -e '.[dev]'
@touch $(VENV)/bin/activate
bootstrap: $(VENV)/bin/activate ## create venv and install editable package
$(DATA_DIR):
mkdir -p $(DATA_DIR)
$(WP_CUR): | $(DATA_DIR)
@echo ">> fetching $(WP_BASE_URL)/$$(basename $@)"
curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)"
$(WP_OLD_1): | $(DATA_DIR)
@echo ">> fetching $(WP_BASE_URL)/$$(basename $@)"
curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)"
$(WP_OLD_2): | $(DATA_DIR)
@echo ">> fetching $(WP_BASE_URL)/$$(basename $@)"
curl -fL --retry 3 -o $@ "$(WP_BASE_URL)/$$(basename $@)"
# The two old_tablesqlbz2.{1,2} parts are split halves of a single bzip2
# stream (.1 is exactly 640 MiB). Concatenate to get a working bz2 file.
$(WP_OLD): $(WP_OLD_1) $(WP_OLD_2)
@echo ">> concatenating old dump parts"
cat $(WP_OLD_1) $(WP_OLD_2) > $@
fetch-cur: $(WP_CUR) ## download cur table dump (~82 MB)
fetch-old: $(WP_OLD) ## download old (revision history) parts and concatenate (~893 MB)
fetch: fetch-cur fetch-old ## download all 3 files (cur + old.1 + old.2 + concat)
ingest-cur: bootstrap fetch-cur ## ingest INGEST_LIMIT cur articles
$(ABORIST) --db $(DB) ingest --source wikipedia_cur --path $(WP_CUR) --limit $(INGEST_LIMIT)
ingest-old: bootstrap fetch-old ## ingest INGEST_LIMIT old (history) revisions
$(ABORIST) --db $(DB) ingest --source wikipedia_old --path $(WP_OLD) --limit $(INGEST_LIMIT)
# Phase 1b: parallel shards into ONE shared SQLite. Workers parallelize
# parser CPU; writes serialize at the WAL writer-lock. ~1.3x wall on 4 cores.
SHARDS ?= 4
ingest-cur-parallel: bootstrap fetch-cur ## ingest cur with SHARDS=N processes -> one shared DB
@for i in $$(seq 0 $$(($(SHARDS) - 1))); do \
$(ABORIST) --db $(DB) ingest --source wikipedia_cur --path $(WP_CUR) \
--shard $$i/$(SHARDS) & \
done; wait
ingest-old-parallel: bootstrap fetch-old ## ingest old history with SHARDS=N processes -> one shared DB
@for i in $$(seq 0 $$(($(SHARDS) - 1))); do \
$(ABORIST) --db $(DB) ingest --source wikipedia_old --path $(WP_OLD) \
--shard $$i/$(SHARDS) & \
done; wait
# Phase 2: attach-forever sharding. Each shard owns its own SQLite file —
# no WAL contention. Reads via `aborist --shards-dir
` attach
# all shards as UNION views. "Merge cost" = 0.
SHARDS_DIR ?= $(HOME)/.aborist/shards
ingest-cur-attached: bootstrap fetch-cur ## sharded ingest, no WAL contention (Phase 2)
@mkdir -p $(SHARDS_DIR)
@for i in $$(seq 0 $$(($(SHARDS) - 1))); do \
$(ABORIST) ingest --source wikipedia_cur --path $(WP_CUR) \
--shards-dir $(SHARDS_DIR) --shard $$i/$(SHARDS) & \
done; wait
ingest-old-attached: bootstrap fetch-old ## sharded ingest of old history (Phase 2)
@mkdir -p $(SHARDS_DIR)
@for i in $$(seq 0 $$(($(SHARDS) - 1))); do \
$(ABORIST) ingest --source wikipedia_old --path $(WP_OLD) \
--shards-dir $(SHARDS_DIR) --shard $$i/$(SHARDS) & \
done; wait
stats-shards: bootstrap ## cross-shard stats via UNION views over $(SHARDS_DIR)
$(ABORIST) --shards-dir $(SHARDS_DIR) stats
ACTIVITY_LIMIT ?= 10
activity: bootstrap ## recent Q&A + freshly cached docs (agent timeline)
$(ABORIST) --shards-dir $(SHARDS_DIR) activity --limit $(ACTIVITY_LIMIT)
falsify: bootstrap ## mark a cached answer wrong: make falsify KEY=hex REASON='why'
@if [ -z "$(KEY)" ]; then echo "usage: make falsify KEY= REASON='why'" >&2; exit 2; fi
$(ABORIST) --shards-dir $(SHARDS_DIR) providence --falsify $(KEY) --reason "$(REASON)"
# Multi-source RAG query against the shard cluster.
# Usage: make query Q="What is anarcho-capitalism?"
QUERY_TOP_K ?= 8
query: bootstrap ## ask the corpus a question; sources are picked across shards
@if [ -z "$$Q" ] && [ -z "$(Q)" ]; then \
echo "usage: make query Q=\"your question\""; exit 2; \
fi
$(ABORIST) --shards-dir $(SHARDS_DIR) query --top-k $(QUERY_TOP_K) "$(Q)"
query-dry: bootstrap ## like 'make query' but skip the LLM call (dry-run)
@if [ -z "$$Q" ] && [ -z "$(Q)" ]; then \
echo "usage: make query-dry Q=\"your question\""; exit 2; \
fi
$(ABORIST) --shards-dir $(SHARDS_DIR) query --top-k $(QUERY_TOP_K) --dry-run "$(Q)"
verify-shards: bootstrap ## cross-shard Merkle round-trip on a random sample
$(ABORIST) --shards-dir $(SHARDS_DIR) verify -n $(VERIFY_N)
analyze-shards: bootstrap ## cross-shard compression spectrum + audit integrity
$(ABORIST) --shards-dir $(SHARDS_DIR) analyze
# Sequential per-shard distill (one process iterates all shards).
distill-shards: bootstrap ## distill every shard in $(SHARDS_DIR), surface -> depth=1 cores
$(ABORIST) --shards-dir $(SHARDS_DIR) distill --process first-sentence-v1 --kind surface
# Parallel per-shard distill: one process per shard. No DB contention
# because each shard is its own file.
distill-shards-parallel: bootstrap ## one distill process per shard (parallel)
@for shard in $(SHARDS_DIR)/*.db; do \
$(ABORIST) --db $$shard distill --process first-sentence-v1 --kind surface & \
done; wait
ingest: ingest-cur ## default ingest = cur (use ingest-old or *-parallel for full)
verify: bootstrap ## round-trip Merkle proofs for VERIFY_N random documents
$(ABORIST) --db $(DB) verify -n $(VERIFY_N)
search: bootstrap ## keyword search; override SEARCH_Q (or pass Q=...)
$(ABORIST) --db $(DB) search '$(if $(Q),$(Q),$(SEARCH_Q))'
stats: bootstrap ## counts: documents, chunks, edges, audit chain
$(ABORIST) --db $(DB) stats
test: bootstrap ## run pytest suite
$(VENV)/bin/pytest -q
# Reproducible micro-benchmark over a fixed slice of cur. Lets you compare
# ETL throughput across configs and catches regressions on optimization
# work. Override BENCH_DOCS=N (default 5000).
BENCH_DOCS ?= 5000
BENCH_DIR := /tmp/aborist-bench
bench: bootstrap fetch-cur ## benchmark serial vs parallel-shared vs attached at $(BENCH_DOCS) docs
@bash bench/run.sh $(BENCH_DOCS)
clean: ## remove venv + caches (keeps fetched data and db)
rm -rf $(VENV) .pytest_cache **/__pycache__ aborist.egg-info
find . -type d -name __pycache__ -prune -exec rm -rf {} +
clean-db: ## drop the aborist db (keeps fetched data and venv)
rm -f $(DB) $(DB)-journal $(DB)-wal $(DB)-shm
clean-data: ## remove fetched dumps
rm -rf $(DATA_DIR)