Initial docstring pass focused on syntax/style; this pass verified each
docstring against actual function behavior. Found and corrected:
WRONG (claimed behavior didn't match):
- _cmd_verify: claimed Q&A/audit verification — actually round-trips
Merkle proofs on N random documents
- _cmd_snapshot_verify: claimed Merkle proof round-trip — actually
re-derives snapshot root and checks for drift
- _cmd_evict: claimed 'archive unused content' — actually NULLs content
and removes FTS row; cores never evict
- _cmd_stats: listed 'index size' which is not in stats() output
OVERSTATEMENT (claim stronger than contract):
- _cmd_ask: 'grounded answer' — verifier may return UNGROUNDED
- _cmd_snapshot_list: 'named' — snapshots have hash roots, not names
MISSING IMPORTANT BEHAVIOR:
- _cmd_rehydrate: didn't mention drift-detection exit code
- _cmd_mesh_status: didn't mention 'enabled' flag (most important field)
- _cmd_distill: didn't mention recursive core→core distillation
- MerkleTree.proof(): didn't mention IndexError on out-of-range
VAGUE:
- _cmd_search: 'Search the corpus with FTS5' → mention output formats
Sphinx rebuild successful (29 warnings, down from 31).
Implements Read the Docs infrastructure to generate API documentation
directly from code docstrings. Replaces static modules.md (1200+ lines).
New structure:
- docs/_source/conf.py — Sphinx configuration (furo theme)
- docs/_source/index.rst — Main TOC
- docs/_source/api/*.rst — Module groups (substrate, storage, retrieval,
qa, distill, mesh, cli)
- docs/_source/Makefile — Local build targets
- docs/_source/README.md — Documentation on building and extending
Makefile integration:
- make docs-api — generate HTML (output: docs/_source/_build/html/)
- make docs-api-clean — remove build artifacts
Build output (40 HTML files):
- API module reference with docstrings
- Source code links (:viewcode: extension)
- Full-text search index
- Module index (genindex, py-modindex)
Sphinx installed in venv as dev dependency. HTML is browseable at
docs/_source/_build/html/index.html (open in browser after build).
This justifies the deletion of modules.md: code docstrings + Sphinx
autodoc = automatically-generated, always-current API reference.
